View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_7 (Length: 518)
Name: NF11389_low_7
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 41821715 - 41821223
Alignment:
| Q |
20 |
gagaatggatgcttggaagctgcgacacctccggatgcagaaaccaaagagttcttaccgcagaaaagtacgattcttctactttcctgatagtctgcca |
119 |
Q |
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| T |
41821715 |
gagaatggatgcttggaagctgcgacacctccggatgctgaaaccaaagagttcttaccgcagaaaagtacgattcttctactttcctgatagtctgcca |
41821616 |
T |
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| Q |
120 |
agccttgtttctcaacaggaaaaccaagaaaaaatcctgattactaacatatgaatgtgttgacaactcagattcggttgttgaaagctttaatgtagtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41821615 |
agccttgtttctcaacaggaaaaccaagaaaaaatcctgattactaacatatgaatgtgttgacaactcagattcggttgttgaaagctttaatgtagtt |
41821516 |
T |
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| Q |
220 |
aaggatgatcaacataagagaaggcaaattccttcagcttcgtcagctttatattttggaggtgtccttggcctcgtccaggcaacaatacttatttctg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41821515 |
aaggatgatcaacataagagaaggcaaattccttcagcttcgtcagcgttatattttggaggtgtccttggcctcgtccaggcaacaatacttatttctg |
41821416 |
T |
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| Q |
320 |
cagcaaaacctttattgaacttcatgggagtgacttctgtaagtacttttgtataaacattacgagacttgcttataggctaatatcacttcagtcttta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41821415 |
cagcaaaacctttattgaacttcatgggagtgacttctgtaagtacttttgtataaacattacgagacttgcttataggctaatatcacttcagtcttta |
41821316 |
T |
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| Q |
420 |
ttttaacctatatctttaatgatttgacctcgtatcaccacacgatgatttaaaagtaatatggatcatttgtacaggattctcctatgctac |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41821315 |
ttttaacctatatctttaatgatttgacctcgtatcaccacacgatgatttaaaagtaatatggatcatttgtacaggattctcctatgctac |
41821223 |
T |
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