View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_high_14 (Length: 250)

Name: NF11390_high_14
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_high_14
NF11390_high_14
[»] chr7 (2 HSPs)
chr7 (1-240)||(13331699-13331938)
chr7 (1-240)||(13342614-13342853)
[»] chr5 (1 HSPs)
chr5 (1-240)||(5672170-5672409)
[»] chr3 (1 HSPs)
chr3 (1-223)||(15762160-15762381)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-229)||(9332-9561)
[»] chr8 (2 HSPs)
chr8 (1-229)||(10637362-10637591)
chr8 (1-229)||(32718003-32718232)
[»] chr1 (1 HSPs)
chr1 (109-229)||(22893625-22893746)
[»] chr6 (3 HSPs)
chr6 (1-223)||(19700901-19701122)
chr6 (135-235)||(21481275-21481375)
chr6 (1-59)||(21481152-21481210)
[»] chr2 (3 HSPs)
chr2 (1-98)||(26661234-26661331)
chr2 (136-235)||(26661358-26661457)
chr2 (147-240)||(6049770-6049863)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13331938 - 13331699
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||    
T  13331938 tggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacatttttttcaggaaagtagtaaactcacgttctcccccatt 13331839  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaa 200  Q
    |       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13331838 ttccccccacgttcaaccctttttccatccattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaa 13331739  T
Q  201 aaccatttttgcccttgccattcccgctattctttctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13331738 aaccatttttgcccttgccattcccgctattctttctctg 13331699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13342853 - 13342614
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||| ||||||||||||||||    
T  13342853 tggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacatttttttcaggaaagtagtaaactcacgttctcccccatt 13342754  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaa 200  Q
    |       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13342753 ttccccccacgttcaaccctttttccatccattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaa 13342654  T
Q  201 aaccatttttgcccttgccattcccgctattctttctctg 240  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  13342653 aaccatttttgcccttgtcattcccgctattctttctctg 13342614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5672409 - 5672170
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||    
T  5672409 tggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttttccaggaaagtagtaaacccacgttctcccccatt 5672310  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaa 200  Q
    |       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5672309 ttccccccacgttcaaccctttttccatccattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaa 5672210  T
Q  201 aaccatttttgcccttgccattcccgctattctttctctg 240  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  5672209 aaccatttttgcccttgtcattcccgctattctttctctg 5672170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15762381 - 15762160
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    |||||| |||||||||||| |||||||| |||| |||||||||| ||||| ||||||||       ||||||||||| || |||||||||||||||||||    
T  15762381 tggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttcccaggaaagtaatacacccacgttctcccccatt 15762282  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattccca-ggaattgaaacccatgatcttcaataaa 199  Q
    |       ||||||||||  |||| ||||  ||||||||||||||||||||||||||||| || ||||||| ||||| |||||| |||||||||||||||    
T  15762281 ttccccc-acgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagatttattcccatggaatggaaacc-atgatcttcaataaa 15762184  T
Q  200 aaaccatttttgcccttgccattc 223  Q
    | |||||||||| ||||| |||||    
T  15762183 ataccatttttgtccttgtcattc 15762160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9332 - 9561
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    ||||||| || |||||||| |||||||| ||||||||||||||| ||| |||||||| |       |||||||||   |  ||||||||| |||||||||    
T  9332 tggaattaaacattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagccatctacccacgttttcccccatt 9431  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccaggaattg-aaacccatgatcttcaataaa 199  Q
    |       ||||||| || || |||||||  || ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||    
T  9432 tcttccccacgttcaccctttgttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaa 9531  T
Q  200 aaaccatttttgcccttgccattcccgcta 229  Q
    | ||||| ||| ||||||||||||||||||    
T  9532 ataccatattttcccttgccattcccgcta 9561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10637362 - 10637591
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    ||||||| || |||||||| |||||||  ||||||||||||||| ||| |||||||| |       |||||||||   |  ||||||||| |||||||||    
T  10637362 tggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagccatctacccacgttttcccccatt 10637461  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccagg-aattgaaacccatgatcttcaataaa 199  Q
    |       ||||||| || ||||||||||  || ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||| ||||||    
T  10637462 tcttccccacgttcacccttttttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgaacttgaataaa 10637561  T
Q  200 aaaccatttttgcccttgccattcccgcta 229  Q
    | ||||| ||||||||||||||||||||||    
T  10637562 ataccatatttgcccttgccattcccgcta 10637591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32718232 - 32718003
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    ||||||| || |||||||| |||||||  ||||||||||||||| ||| | |||||| |       |||||||||   |  ||||||||| |||||||||    
T  32718232 tggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttcccaggaaagccatctacccacgttttcccccatt 32718133  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccaggaattg-aaacccatgatcttcaataaa 199  Q
    |       ||||||| || ||||||||||  || ||||||||||| || |||||||||||||| ||||||||||| || |||||||||||||| ||||||    
T  32718132 tcttccccacgttcacccttttttccatcccttttattcccatgagatggcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaa 32718033  T
Q  200 aaaccatttttgcccttgccattcccgcta 229  Q
    | ||||| ||||||||||||||||||||||    
T  32718032 ataccatatttgcccttgccattcccgcta 32718003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 22893625 - 22893746
Alignment:
Q  109 acgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccagg-aattgaaacccatgatcttcaataaaaaaccatt 207  Q
    ||||||| || ||||||||||  || ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||| |||||     
T  22893625 acgttcacccttttttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccata 22893724  T
Q  208 tttgcccttgccattcccgcta 229  Q
    ||| ||||||||||||||||||    
T  22893725 ttttcccttgccattcccgcta 22893746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19700901 - 19701122
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctcccccatt 100  Q
    ||||||| || |||||||| |||||||  ||||||||||||||| ||| ||||||||||       |||||||||   |  ||||||||| ||||  |||    
T  19700901 tggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttcccaggaaagccatctacccacgttttccc--att 19700998  T
Q  101 tnnnnnnnacgttcaaccctttttccatcgattctattcccatgaaatagcttgggaaagtttcattcccagg-aattgaaacccatgatcttcaataaa 199  Q
    |       ||||||| || ||||||||||  || |||||||| || ||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||    
T  19700999 tcttccccacgttcacccttttttccatcccttttattcccaagagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaa 19701098  T
Q  200 aaaccatttttgcccttgccattc 223  Q
    | ||||| ||| ||||||||||||    
T  19701099 ataccatattttcccttgccattc 19701122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 21481275 - 21481375
Alignment:
Q  135 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattctt 234  Q
    ||||||| ||| ||||| ||||||||||| ||||||||  | | ||| ||||||||| ||| |||| |||  || | ||||||||||||| |||||||||    
T  21481275 tattcccctgagatagcatgggaaagttttattcccagagaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcctgctattctt 21481374  T
Q  235 t 235  Q
    |    
T  21481375 t 21481375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21481152 - 21481210
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatac 59  Q
    |||||||||||||| |||| |||||||||||||||  ||||||| || || ||||||||    
T  21481152 tggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatac 21481210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26661234 - 26661331
Alignment:
Q  1 tggaattgaatattcctttatttggtagatgggaaccacacaaaaatgcccaggaatacnnnnnnnccaggaaagtagtaaacccacgttctccccca 98  Q
    |||||||||||||| |||| |||||||||||||||  ||||||| ||||| ||||||||       ||||||||||  |  |||||||||||||||||    
T  26661234 tggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaagtcttttacccacgttctccccca 26661331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 26661358 - 26661457
Alignment:
Q  136 attcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattcttt 235  Q
    ||||| |||| ||||| ||||||||||| ||| ||||| | | ||| ||||||||| ||| |||| |||  || | ||||||||||||||||||||||||    
T  26661358 attccaatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattcttt 26661457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 6049770 - 6049863
Alignment:
Q  147 atagcttgggaaagtttcattcccaggaattg-aaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattctttctctg 240  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||    |||||| |||||| ||||| ||| ||||||||| |||||||||||    
T  6049770 atagcttgggaaacttttattcccaggaaatgtaaacccatgatctatt-taaaaagccatttatgcccctgcaattcccgcttttctttctctg 6049863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University