View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_high_4 (Length: 518)
Name: NF11390_high_4
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 34322908 - 34322441
Alignment:
| Q |
1 |
gaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322908 |
gaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggct |
34322809 |
T |
|
| Q |
101 |
aagatggaaaatggtgttcttactttgacacttaataagttgtcacatgataagattaaaggtcctagaatggttagcattgctgaggaggatgagaaac |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322808 |
aagatggaaaatggtgtacttactttgacacttaataagttgtcacatgataagatcaaaggtcctagaatggttagcattgctgaggaggatgagaaac |
34322709 |
T |
|
| Q |
201 |
catctaagcaggagctttgaaatagtcatgtgtgattgtgatcat-----ttgtagtaaaaatgctttcttaaatcatgtgtttgattagtgaataaagg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
34322708 |
catctaagcaggagctttgaaatagtcatgtgtgattgtgatcatgatcattgtagtaaaaatgcctttttaaatcatgtgtttgattagtgaataaagg |
34322609 |
T |
|
| Q |
296 |
gatttcacacgaggtcttgtttgtgtgagtaacttcttgatgatgagtcacttctagtgttgtaagga-cttattatctcttaatggatgaaactagttg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
34322608 |
gatttcacacgaggtcttgtttgtgtgagtaacttcttgatgatgagtcaattctagtgttgtaaggaccttattatctcttaatgaatgaaactagttg |
34322509 |
T |
|
| Q |
395 |
acttttgtgtctatacgacatttttagtttaattactaatatcttgattctttgcatataataatctt |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322508 |
acttttgtgtctatacgacatttttagtttaattactaatatcttgattctttgcatataataatctt |
34322441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 34312063 - 34312473
Alignment:
| Q |
1 |
gaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |
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|
| T |
34312063 |
gaaacaaggtgatcattggcacagagttgaaagatcttatggaaaattctggaggcaatttagattgccagaaaatgttgatttggactcagttaaggct |
34312162 |
T |
|
| Q |
101 |
aagatggaaaatggtgttcttactttgacacttaataagttgtcacatgataagattaaaggtcctagaatggttagcattgctgaggaggatgagaaac |
200 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| | | |
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|
| T |
34312163 |
aaaatggaaaatggtgtacttactttgacacttaataagttgtcacaagataagactaaaggtcctagaatggttagcattgctgaggagagtgagcacc |
34312262 |
T |
|
| Q |
201 |
catctaagcaggagctttgaaatagtcatgtgtgattgtgatcat------ttgt---agtaaaaatgctttcttaaatcatgtgtttgattagtgaata |
291 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||||| | |||| ||||||| ||||| || ||| | |||||||||||||| ||| |
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| T |
34312263 |
catctaaacaagagctttgaaatagtca--tgtgattgtgatattatagtattgtagcagtaaaattgctt--tttaattacgtgtttgattagtg-ata |
34312357 |
T |
|
| Q |
292 |
aagggatttcacacgaggtcttgtttg-tgtgagtaacttcttgatgatgagtcacttctagtgttgt--aaggacttattatctcttaatggatgaaac |
388 |
Q |
| |
|
||||| ||||||| | |||| |||||| | ||||| |||||||| ||||| |||||| |||||||| |||| |||||||||||||||| ||||||| |
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| T |
34312358 |
aaggg-tttcacatgtggtcgtgtttgttttgagtcggttcttgataatgagccacttccagtgttgttaaaggctttattatctcttaatgaatgaaac |
34312456 |
T |
|
| Q |
389 |
tagttgacttttgtgtc |
405 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
34312457 |
tagttgacttgtgtgtc |
34312473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 34304728 - 34304535
Alignment:
| Q |
6 |
aaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggctaagat |
105 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
34304728 |
aaggtgatcgttggcatagagctgaaagatcatatggaaaattttggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagat |
34304629 |
T |
|
| Q |
106 |
ggaaaatggtgttcttactttgacacttaataagttgtcacatgataagattaaaggtcctagaatggttagcattgctgaggaggatgagaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||| | |||||||||| ||||||| |||||||| |
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|
| T |
34304628 |
agaaaatggtgttcttactttgacacttaataagttgtctcatgatcagattaaaagtactagagttgttagcattgatgaggagaatgagaaa |
34304535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 33426338 - 33426536
Alignment:
| Q |
1 |
gaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggct |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||| ||||| ||||| ||||| || ||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
33426338 |
gaaaaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggagacagtttagattgcctgaaaatgctgatttggattcggttaaggcc |
33426437 |
T |
|
| Q |
101 |
aagatggaaaatggtgttcttactttgacacttaataagttgtcacatgataagattaaaggtcctagaatggttagcattgctgaggaggatgagaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| || ||||| | |||||||||| |||||| |||||||| |
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|
| T |
33426438 |
aagatggaaaatggtgttcttactttaacacttcgtaagttgtcacatggtaagattaaaagtactagacttgttagcattgaggaggagaatgagaaa |
33426536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 34314506 - 34314702
Alignment:
| Q |
6 |
aaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggctaagat |
105 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| ||||||||||| || |||||||||| || |||| |||||| ||||| |||||||||||| | |
|
|
| T |
34314506 |
aaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccggagaatgctgattttgattccgtgaaggctaaggt |
34314605 |
T |
|
| Q |
106 |
ggaaaatggtgttcttactttgacacttaataagttgtcacatg---ataagattaaaggtcctagaatggttagcattgctgaggaggatgagaaa |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |||| || |||||||| || |||| | |||||||||| | ||||| |||||||| |
|
|
| T |
34314606 |
ggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaa |
34314702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 34317252 - 34317090
Alignment:
| Q |
1 |
gaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggct |
100 |
Q |
| |
|
|||| ||||||||| |||||| | ||||||||| || || ||||||||||| || || |||||||| || |||| ||||||||||||| | |||||| |
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|
| T |
34317252 |
gaaaaaaggtgatcgttggcacaaagttgaaagggtgtacggaaaattctggagacagttaagattgccagagaatgctgatttggattcaattaaggct |
34317153 |
T |
|
| Q |
101 |
aagatggaaaatggtgttcttactttgacacttaataagttgtcacatgataagattaaaggt |
163 |
Q |
| |
|
|| | ||||||||| ||||||||||||||| ||||||||||||| |||| |||||| |||||| |
|
|
| T |
34317152 |
aataaggaaaatggagttcttactttgacatttaataagttgtcgcatggtaagatcaaaggt |
34317090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 34322399 - 34322358
Alignment:
| Q |
461 |
tttgaattgtgaaaaaatcatatcatattttaatttactaac |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34322399 |
tttgaattgtgaaaaaatcatatcatattttaatttactaac |
34322358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 25651361 - 25651244
Alignment:
| Q |
9 |
gtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggctaagatgga |
108 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| ||||||||||| ||| ||||||| || |||||||||||||||||||| | ||| | |||||||| |
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|
| T |
25651361 |
gtgatcgttggcatagagttgaaaggatgtgtggaaaattctggagacaacttagattaccagaaaatgttgatttggattcgattaagacaaagatgga |
25651262 |
T |
|
| Q |
109 |
aaatggtgttcttacttt |
126 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
25651261 |
agatggtgttcttacttt |
25651244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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