View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_high_7 (Length: 455)
Name: NF11390_high_7
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 211 - 445
Target Start/End: Complemental strand, 22684348 - 22684112
Alignment:
| Q |
211 |
agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc |
308 |
Q |
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| T |
22684348 |
agaaacacatcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgc |
22684249 |
T |
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| Q |
309 |
tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684248 |
tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa |
22684149 |
T |
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| Q |
409 |
ttaatgctttatttgtttaaatttaccacaggttctg |
445 |
Q |
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| T |
22684148 |
ttaatgctttatttgttcaaatttaccacaggttctg |
22684112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 22684556 - 22684389
Alignment:
| Q |
4 |
cttctgatgaaa-gcgtctctggtgtctgacatggatacgacatcgatcaacacatgtgattacgttcaattaactcatattttcaaatttttcaccaat |
102 |
Q |
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| T |
22684556 |
cttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatgtgattacgttcaattaactcatattttcaaatttttcacccgt |
22684457 |
T |
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| Q |
103 |
gtcaatgtgtctgtgtcagtgttgatttgccgtgtccttgtttgtggaagtgcttcataggtgcattg |
170 |
Q |
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| T |
22684456 |
gtcaatgtgtctgtgtcagtgtcgatttgtcgtgtccttgtttgtggaagtgcttcataggtgcattg |
22684389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 22695831 - 22695722
Alignment:
| Q |
211 |
agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||||||| ||||||||||| |
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| T |
22695831 |
agaaacacatcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgc |
22695732 |
T |
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| Q |
309 |
tcaagttttg |
318 |
Q |
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| T |
22695731 |
taaagttttg |
22695722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
| Q |
372 |
gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg |
445 |
Q |
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| T |
22695596 |
gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg |
22695522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
| Q |
53 |
acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc |
105 |
Q |
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| T |
23423220 |
acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc |
23423271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
| Q |
55 |
acatgtgattacgttcaattaactcatattttcaaattttt |
95 |
Q |
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| T |
14782856 |
acatgtgattacgttcaattaattcattttttcaaattttt |
14782896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
| Q |
55 |
acatgtgattacgttcaattaactcatattttcaaattttt |
95 |
Q |
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| T |
9198640 |
acatgtgattatgttcaattaattcattttttcaaattttt |
9198680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
| Q |
53 |
acacatgtgattacgttcaattaactcatattttcaaattttt |
95 |
Q |
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| T |
10764084 |
acacatgcgattacgttcaattaattcattttttcaaattttt |
10764126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
| Q |
55 |
acatgtgattacgttcaattaactcatattttcaaatttttcacca |
100 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
26456492 |
acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca |
26456448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 14227036 - 14226973
Alignment:
| Q |
59 |
gtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtg |
123 |
Q |
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||||||| |||||||||| |||| ||||||||||||| | |||||||||||| |||||||||| |
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| T |
14227036 |
gtgattatgttcaattaattcattttttcaaattttt-attgatgtcaatgtgtatgtgtcagtg |
14226973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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