View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11390_high_9 (Length: 370)
Name: NF11390_high_9
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 24927146 - 24927476
Alignment:
| Q |
17 |
agaggaaaattgctatgctgcatataaactcattaactgaatcttaattcacctaactgctattgatagggtactttagtaaatgaaacaaacacatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24927146 |
agaggaaaattgctatgctgcatatacactcattaacagaatcttaattcacctaactgctattgatagggtactttagtaaatgaaacaaacacatttt |
24927245 |
T |
|
| Q |
117 |
agcatagaaattagtaaactcgataattttcctatgcgtgtgtaaccttaagagacatgtaatatgagacagaggaagtattaaatagttcttaccctta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24927246 |
agcatagaaattagtaaactcgataattttcctatgcgtgtgtaaccttaaaagacatgtaatatgagacagaggaagtattaaatagttcttaccctta |
24927345 |
T |
|
| Q |
217 |
gctttaaagcagttggacgagaactgcgagtctccgtttcactcttcaatggcatttgtgactccttgtctaaagtaggaaaaagcggtgtatcaggtgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24927346 |
gctttaaagcagttggacgagaactgtgagtctccgtttcactcttcaatggcatttgtgactccttgtctaaagtaggaaaaagtggtgtatcaggtgg |
24927445 |
T |
|
| Q |
317 |
tgtaagaagcctgataacaaaaaactcttgt |
347 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
24927446 |
tgtaagaagcctgataacgaaaaactcttgt |
24927476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University