View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_low_10 (Length: 366)
Name: NF11390_low_10
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 167 - 349
Target Start/End: Original strand, 13737840 - 13738020
Alignment:
| Q |
167 |
cataataaaagtgtggcgtgatttttctattcacttccaaaagctgcccgtcttacataactgttctgnnnnnnnnnnnnnnnnnncaaataggtgcatg |
266 |
Q |
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| T |
13737840 |
cataataaaagtgtggcgtgatttttctattcacttccaaaagctgcccgtcttacataactgttctgttttctttttcttttt--caaataggtgcatg |
13737937 |
T |
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| Q |
267 |
tcaagttagatcggtcaatgatatatagaaatcataacataatcgtatattaactacgaagtaggtgtatggatgaccttctg |
349 |
Q |
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| T |
13737938 |
tcgagttagatcggtcaatgatatatagaaatcataacataatcgtattttaactacgaagtaggtgtacgaatgaccttctg |
13738020 |
T |
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Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 13764756 - 13764849
Alignment:
| Q |
253 |
caaataggtgcatgtcaagttagatcggtcaatgatatatagaaatcataacataatcgtatattaactacgaagtaggtgtatggatgacctt |
346 |
Q |
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| T |
13764756 |
caaataggtgcatgtcgagttagatcggtcaatgatatatagaaatcataacataatcgtattttaactacgaagtaggtgtatggatgacctt |
13764849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 13751141 - 13751203
Alignment:
| Q |
17 |
aagaatacctagaatgcaacaaccacaccaaagtgcttctacccttcagaagcttcttaagag |
79 |
Q |
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| T |
13751141 |
aagaatacctagaatgcaacaaccacaccaaagtgcttctacccttcagaagcttcttaagag |
13751203 |
T |
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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 13751363 - 13751455
Alignment:
| Q |
253 |
caaataggtgcatgtcaagttagatcggtcaatgatatatagaaatcataacataatcgtatattaactacgaagtaggtgtatggatgacct |
345 |
Q |
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| T |
13751363 |
caaataggtgcatgttgagttagaacggtctatgatatatataaatcataacataattgtatttaaactacgaagtaggtgtatggatgacct |
13751455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 13736886 - 13736952
Alignment:
| Q |
109 |
ttgatagtttagaaacattcctctacccaaggaaaacaattgcattccctcacctcatcataataaa |
175 |
Q |
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| T |
13736886 |
ttgatagtttagaaacattcctctatctaaggaaaacaattgcattccctcacctcatcataataaa |
13736952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 11614231 - 11614287
Alignment:
| Q |
290 |
tatagaaatcataacataatcgtatattaactacgaagtaggtgtatggatgacctt |
346 |
Q |
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| T |
11614231 |
tatagaaatcataacataatcgtattttaattgcgaagtaggtgtatggatgacctt |
11614287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 13751265 - 13751341
Alignment:
| Q |
161 |
cctcatcataataaaagtgtggcgtgatttttctattcacttccaaaagctg---cccgtcttacataactgttctg |
234 |
Q |
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| T |
13751265 |
cctcatcataataaaagtgtggcatgattttcctatttacttccaacagctgaaacctgtcttacataattgttctg |
13751341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 15996199 - 15996284
Alignment:
| Q |
261 |
tgcatgtcaagttagatcggtcaatgatatatagaaatcataacataatcgtatattaactacgaagtaggtgtatggatgacctt |
346 |
Q |
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| T |
15996199 |
tgcatgtcgcgttatatcagtctatgatatacataaatcattacataatcgtattttaactgcgaagtatgtgtatggatgacctt |
15996284 |
T |
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