View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_low_11 (Length: 350)

Name: NF11390_low_11
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_low_11
NF11390_low_11
[»] chr2 (7 HSPs)
chr2 (25-350)||(14271025-14271349)
chr2 (25-102)||(33402427-33402504)
chr2 (269-350)||(14321962-14322040)
chr2 (25-87)||(35875409-35875471)
chr2 (25-87)||(35882898-35882960)
chr2 (25-87)||(36722611-36722673)
chr2 (314-350)||(14305571-14305607)
[»] scaffold0206 (1 HSPs)
scaffold0206 (25-76)||(7833-7884)
[»] chr8 (12 HSPs)
chr8 (25-76)||(20025739-20025790)
chr8 (25-76)||(20035903-20035954)
chr8 (25-102)||(24267865-24267942)
chr8 (303-350)||(25886632-25886679)
chr8 (25-87)||(12765597-12765659)
chr8 (25-87)||(31577084-31577146)
chr8 (25-87)||(42714532-42714594)
chr8 (25-102)||(996607-996684)
chr8 (25-76)||(24098030-24098081)
chr8 (302-350)||(44350480-44350525)
chr8 (25-102)||(9417615-9417692)
chr8 (25-102)||(15968656-15968733)
[»] chr6 (3 HSPs)
chr6 (25-102)||(14097011-14097088)
chr6 (25-87)||(17514403-17514465)
chr6 (25-102)||(2846886-2846963)
[»] chr3 (5 HSPs)
chr3 (25-76)||(7787304-7787355)
chr3 (25-87)||(23484336-23484398)
chr3 (25-102)||(9294982-9295059)
chr3 (25-87)||(13978967-13979029)
chr3 (39-76)||(9307740-9307777)
[»] chr7 (4 HSPs)
chr7 (25-87)||(32816269-32816331)
chr7 (25-102)||(9735042-9735119)
chr7 (34-87)||(2890015-2890068)
chr7 (25-102)||(4315188-4315265)
[»] chr4 (4 HSPs)
chr4 (25-102)||(50066790-50066867)
chr4 (25-76)||(25514216-25514267)
chr4 (25-102)||(11477688-11477765)
chr4 (25-102)||(34496199-34496277)
[»] chr5 (5 HSPs)
chr5 (25-87)||(26648727-26648789)
chr5 (25-87)||(26920312-26920374)
chr5 (25-102)||(11221476-11221553)
chr5 (41-102)||(14914848-14914909)
chr5 (25-69)||(42734514-42734558)
[»] chr1 (2 HSPs)
chr1 (25-76)||(26908510-26908561)
chr1 (25-76)||(35756733-35756784)
[»] scaffold0091 (1 HSPs)
scaffold0091 (25-87)||(16616-16678)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 350
Target Start/End: Complemental strand, 14271349 - 14271025
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttcatgatggtcatgcctaacacttt 124  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||  |||||| ||| ||||||  | |||||||||||  |   |||||| |||||||||    
T  14271349 tcaccattcataaaacttagtgtttattccataaagtttgttataattaaaacattcatcaaaaagatttttgtttcaacagaatcatgcataacacttt 14271250  T
Q  125 atttgatattaaattttcataccacaagacactacagttacatgctacttcaatactttctttgacggtatctattccattctcttcctccatcaaaatc 224  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  14271249 atttgatattaaattttcatatcacaagacactacaattacatgctacttcaatacattctttgacagtatctattccattctcttcctccatcaaaatc 14271150  T
Q  225 atgtatcaaacttgttaagttacatattttacgcaacatataacatgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttc 324  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14271149 atgtatcaaacttgtt-agttacatatttcacacaacatataacatgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttc 14271051  T
Q  325 atcatggctaacttctccttcatgca 350  Q
    ||||||||||||||||||||||||||    
T  14271050 atcatggctaacttctccttcatgca 14271025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 33402504 - 33402427
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  33402504 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 33402427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 14322040 - 14321962
Alignment:
Q  269 atgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcatcatggctaacttctccttcatgca 350  Q
    |||||||| ||| | || ||||||| | ||||||||||||| ||||||   ||||| |||||||||||||||||||||||||    
T  14322040 atgaaaccttatcagttttcatcacataataatcttttaacaatgtct---acttcttcatggctaacttctccttcatgca 14321962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 35875471 - 35875409
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||| |||||| ||| ||||||    
T  35875471 tcaccattcataaaacttagcgtttattccataatgtttgttatcattaaaacattcatcaaa 35875409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 35882960 - 35882898
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||| |||||| ||| ||||||    
T  35882960 tcaccattcataaaacttagcgtttattccataatgtttgttatcattaaaacattcatcaaa 35882898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 36722673 - 36722611
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||| |||||| ||| ||||||    
T  36722673 tcaccattcataaaacttagcgtttattccataatgtttgttatcattaaaacattcatcaaa 36722611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 14305607 - 14305571
Alignment:
Q  314 tcttctacttcatcatggctaacttctccttcatgca 350  Q
    |||||||||||  ||||||||||||||||||||||||    
T  14305607 tcttctacttctgcatggctaacttctccttcatgca 14305571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 7884 - 7833
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7884 tcaccattcataaaacttagtgtttattctataaagtttgttatcattaaaa 7833  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 20025790 - 20025739
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  20025790 tcaccattcataaaacttagtgtttattctataaagtttgttatcattaaaa 20025739  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 20035954 - 20035903
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  20035954 tcaccattcataaaacttagtgtttattctataaagtttgttatcattaaaa 20035903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 24267942 - 24267865
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  24267942 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 24267865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 25886679 - 25886632
Alignment:
Q  303 ttttaaccatgtcttctacttcatcatggctaacttctccttcatgca 350  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  25886679 ttttaaccatgtcttcttcttcttcatggctaacttctccttcatgca 25886632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 12765659 - 12765597
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||| |||||| ||| ||||||    
T  12765659 tcaccattcataaaacttagtgtttattccataaaatttgttatcattaaaacattcatcaaa 12765597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 31577084 - 31577146
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||    
T  31577084 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcatcaaa 31577146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 42714532 - 42714594
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||| |||||| ||| ||||||    
T  42714532 tcaccattcataaaacttagcgtttattccataaggtttgttatcattaaaacattcatcaaa 42714594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 996684 - 996607
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    |||| |||||||| ||||||||||||||| |||| |||||||||| |||||| ||| || |||  | |||||||||||    
T  996684 tcactattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcataaaaaagatttttgtttca 996607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 24098030 - 24098081
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| ||||||||||||||  |||||| |||||||| ||||||    
T  24098030 tcaccattcataaaacttagtgtttatttcataaagattgttatcattaaaa 24098081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 44350525 - 44350480
Alignment:
Q  302 cttttaaccatgtcttctacttcatcatggctaacttctccttcatgca 350  Q
    |||||||||||||||||| ||||||   |||||||||||||||||||||    
T  44350525 cttttaaccatgtcttcttcttcat---ggctaacttctccttcatgca 44350480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 9417692 - 9417615
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    |||||||| |||| ||||||||| ||||  |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  9417692 tcaccatttataaaacttagtgtctatttcataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 9417615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 15968733 - 15968656
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    |||| |||||||| ||||| ||||||||| |||| |||||||||| |||||| ||| | ||||  | |||||||||||    
T  15968733 tcactattcataaaacttaatgtttattccataaggtttgttatcattaaaacattcaccaaagagatttttgtttca 15968656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 14097088 - 14097011
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  14097088 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 14097011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 17514403 - 17514465
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    |||||||| |||| |||||||||||||||||||| |||||||||| |||||| ||| ||||||    
T  17514403 tcaccatttataaaacttagtgtttattctataaggtttgttatcattaaaacattcatcaaa 17514465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 2846963 - 2846886
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    |||| |||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  2846963 tcacaattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 2846886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 7787304 - 7787355
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  7787304 tcaccattcataaaacttagtgtttattccataaagtttgttatcattaaaa 7787355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 23484398 - 23484336
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||  |||||| ||| ||||||    
T  23484398 tcaccattcataaaacttagtgtttattccataaagtttgttattattaaaacattcatcaaa 23484336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 9294982 - 9295059
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||| | || |||||||||| |||||| ||| ||||||  | |||||||||||    
T  9294982 tcaccattcataaaacttagtgtttattccagaaggtttgttatcattaaaacattaatcaaaaagatttttgtttca 9295059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 13978967 - 13979029
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| |||| |||||||||| |||| |||||||||| |||||| ||| ||||||    
T  13978967 tcaccattcataaaactttgtgtttattccataaggtttgttatcattaaaacattcatcaaa 13979029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 9307777 - 9307740
Alignment:
Q  39 acttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  9307777 acttagtgtttattccataaagtttgttatcattaaaa 9307740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 32816331 - 32816269
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||    
T  32816331 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcatcaaa 32816269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 9735119 - 9735042
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||| ||||||| |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  9735119 tcaccattcataaaacttagtctttattccataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 9735042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 2890068 - 2890015
Alignment:
Q  34 ataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||| ||||||||||||||| |||||||||| |||||| ||| ||||||    
T  2890068 ataatacttggtgtttattctataaggtttgttatcattaaaacattcatcaaa 2890015  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 4315188 - 4315265
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||| |||  |||||||||| |||||| |||  |||||  | |||||||||||    
T  4315188 tcaccattcataaaacttagtgtttattccatatggtttgttatcattaaaacattcgtcaaaaagatttttgtttca 4315265  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 50066790 - 50066867
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| || |||  | |||||||||||    
T  50066790 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaacattcataaaaaagatttttgtttca 50066867  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 25514267 - 25514216
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||| ||||||    
T  25514267 tcaccattcataaaacttagtgtttattccataaggtttgttatcattaaaa 25514216  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 11477765 - 11477688
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| ||||||||||||||  |||| |||||||||| | |||| ||| ||||||  | |||||||||||    
T  11477765 tcaccattcataaaacttagtgtttatttcataaggtttgttatcatcaaaacattcatcaaaaagatttttgtttca 11477688  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 34496199 - 34496277
Alignment:
Q  25 tcaccattcataatactt-agtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||| ||||||| |||| || |||||||| |||| |||||||||| |||||| ||||||||||  | |||||||||||    
T  34496199 tcacctttcataaaactttagcgtttattccataaggtttgttatcattaaaatatttatcaaaaagatttttgtttca 34496277  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 26648789 - 26648727
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||| |||||| ||| ||||||    
T  26648789 tcaccattcagaaaacttagtgtttattccataaagtttattatcattaaaacattcatcaaa 26648727  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 26920374 - 26920312
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||| |||||| ||| ||||||    
T  26920374 tcaccattcagaaaacttagtgtttattccataaagtttattatcattaaaacattcatcaaa 26920312  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 11221553 - 11221476
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    |||| |||||||| ||||||| ||||||| |||| |||||||||| |||||| ||| ||||||  | |||||||||||    
T  11221553 tcactattcataaaacttagtctttattccataaggtttgttatcattaaaacattcatcaaaaagatttttgtttca 11221476  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 14914909 - 14914848
Alignment:
Q  41 ttagtgtttattctataaagtttgttatctttaaaaaatttatcaaatcggtttttgtttca 102  Q
    ||||||||||||| |||| |||||||||| |||||| || |||||||  | |||||||||||    
T  14914909 ttagtgtttattccataaggtttgttatcattaaaatatctatcaaaaagatttttgtttca 14914848  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 42734514 - 42734558
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatc 69  Q
    ||||||||||||| ||||||| ||||||| |||| ||||||||||    
T  42734514 tcaccattcataaaacttagtctttattccataaggtttgttatc 42734558  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 26908510 - 26908561
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    |||||||| |||| ||||||||||||||| |||| |||||||||| ||||||    
T  26908510 tcaccattaataaaacttagtgtttattccataaggtttgttatcattaaaa 26908561  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 35756733 - 35756784
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaa 76  Q
    ||||||||||||| | ||||||||||||| |||| |||||||||| ||||||    
T  35756733 tcaccattcataaaatttagtgtttattccataaggtttgttatcattaaaa 35756784  T

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Target: scaffold0091 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 16616 - 16678
Alignment:
Q  25 tcaccattcataatacttagtgtttattctataaagtttgttatctttaaaaaatttatcaaa 87  Q
    ||||||||||||| | ||||||||||||| |||| |||||||||  |||||| ||| ||||||    
T  16616 tcaccattcataaaatttagtgtttattccataaggtttgttattattaaaacattcatcaaa 16678  T

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