View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_low_12 (Length: 291)

Name: NF11390_low_12
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_low_12
NF11390_low_12
[»] chr3 (36 HSPs)
chr3 (87-285)||(6140823-6141021)
chr3 (87-285)||(13271847-13272045)
chr3 (87-285)||(6257739-6257937)
chr3 (87-280)||(6264224-6264417)
chr3 (87-285)||(6167434-6167626)
chr3 (93-285)||(6592653-6592845)
chr3 (117-283)||(6243856-6244022)
chr3 (87-285)||(6898625-6898823)
chr3 (87-283)||(6723373-6723569)
chr3 (87-285)||(7748539-7748737)
chr3 (87-280)||(6236267-6236460)
chr3 (87-285)||(6881053-6881251)
chr3 (87-285)||(6915638-6915836)
chr3 (117-285)||(6850603-6850770)
chr3 (19-87)||(6141108-6141176)
chr3 (19-87)||(6167713-6167781)
chr3 (94-283)||(5297284-5297473)
chr3 (19-87)||(6258024-6258092)
chr3 (87-206)||(5262399-5262518)
chr3 (89-205)||(5279276-5279392)
chr3 (19-87)||(6264507-6264575)
chr3 (19-87)||(13271692-13271760)
chr3 (33-87)||(6723232-6723286)
chr3 (34-87)||(6244115-6244168)
chr3 (34-87)||(6915923-6915976)
chr3 (196-284)||(4390320-4390408)
chr3 (33-87)||(6881338-6881392)
chr3 (18-87)||(6236547-6236616)
chr3 (18-87)||(6898910-6898979)
chr3 (44-87)||(6592517-6592560)
chr3 (33-87)||(6850433-6850487)
chr3 (33-87)||(7748824-7748878)
chr3 (119-164)||(5248814-5248859)
chr3 (33-80)||(8588563-8588610)
chr3 (246-284)||(5266617-5266655)
chr3 (33-81)||(8570111-8570159)
[»] chr1 (1 HSPs)
chr1 (19-87)||(35141508-35141576)
[»] scaffold1643 (1 HSPs)
scaffold1643 (87-167)||(825-905)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 6141021 - 6140823
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6141021 tcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcagctata 6140922  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6140921 attcatcaaatgttgcatttagatcccttgaaactttgcgggttgagtatatgtctgaatggaaggaatggttatgccttgaaggtttccctttgcttc 6140823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 87 - 285
Target Start/End: Original strand, 13271847 - 13272045
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||||||||||||| || | | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13271847 tcccagttgccaccacttgggcagttgccttctctcgagaagctttccatttctggctgtcatggaatagagatcattggttcagagttttgcggctata 13271946  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13271947 atccatcaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttcccattgcttc 13272045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 6257937 - 6257739
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6257937 tcccagttgccaccacttgggaagttcccttctctcaagaagctttccatttcaggctgtcatggaataaagatcattggttcagagttttgcggctata 6257838  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  6257837 attcatcaaatgttgcatttagatcccttgaaactttgcgggttgagtatatgtctgaatggaaggaatggttatgccttgaaggtttccctctgcttc 6257739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 87 - 280
Target Start/End: Complemental strand, 6264417 - 6264224
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  6264417 tcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattggttcagagttttgccgctata 6264318  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttcccttt 280  Q
    |||||  ||||||||||||||||||||||||||||||| |  |  || | |||||||||||||||||||||||||||||||| |||||||||||    
T  6264317 attcagcaaatgttccatttagatcccttgaaactttgtgtttcaagaacatgtctgaatggaaggaatggttatgtcttgatggtttcccttt 6264224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 6167626 - 6167434
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||||||||||||| || | | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  6167626 tcccagttgccaccacttgggcagttccattctctcaagaagctttccatttccggctgtcatggaatagagaacattggttcagagtttttcggctata 6167527  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||      ||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6167526 att------atgctgcatttagatcccttgaaactttgcgggtggagtatatgtctgaatggaaggaatggttatgccttgaaggtttccctttgcttc 6167434  T

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Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 93 - 285
Target Start/End: Original strand, 6592653 - 6592845
Alignment:
Q  93 ttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctataattcat 192  Q
    ||||||||||||||| || | |  |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||    
T  6592653 ttgccaccacttgggcagttcccctctctcaagaagctttccttttcaggctgtgatggaatagagatcattggtacagaattttacggctataattcat 6592752  T
Q  193 taaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
     ||||||||||||||||| ||||||||| |||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592753 caaatgttccatttagattccttgaaacattgcgatttgagaacatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 6592845  T

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Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 117 - 283
Target Start/End: Complemental strand, 6244022 - 6243856
Alignment:
Q  117 tctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctataattcattaaatgttccatttagatcccttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||    
T  6244022 tctctcaagaagctttccatttcaggctgtcatggaataggtatcattggttcagagttttgccgctataattcatcaaattttacatttagatcccttg 6243923  T
Q  217 aaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgct 283  Q
    ||||||||||| ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||    
T  6243922 aaactttgcggtttgagaatatgtctgaatggaaagattggttatgtattgaaggtttccctttgct 6243856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 6898823 - 6898625
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||| ||||||||| || | |  |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |||| ||||| |    
T  6898823 tcccagttgcccccacttgggcagttaccctctctcaagaagctttccatttcaggctgtgatggaatagatatcattggtacagagatttgtggctaca 6898724  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||||| ||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  6898723 attcatcaaatgatccatttagatcccttgaaactttgcgatttgagcacatgtctgaatggaaggaatggttatgtcttgaatgttttcatttgcttc 6898625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 6723373 - 6723569
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    |||||||| |||||||||||| || | |  | |||| ||||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  6723373 tcccagttaccaccacttgggcagttcccctttctcgagaagctttccatttcaggctgtgatggaatagagaccattggaacagagttttgcggctata 6723472  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgct 283  Q
    || | | || |||||||||||||||||||| |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6723473 atgcttcaagtgttccatttagatcccttgtaactttgcgatttgagcaaatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgct 6723569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 7748737 - 7748539
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    |||||||| ||| |||||||| || | |  |||||||||||||||||||||||||||||  ||||||||||||| |||||| ||||| |||| |||||||    
T  7748737 tcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcagagatttgtggctata 7748638  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||||| ||||||| |||||||||| ||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7748637 attcatcaaatgtttcatttagatctcttgaaactttgcgatttgagcacatgtcagaatggaaggaatggttatgtcttgaatgtttccctttgcttc 7748539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 87 - 280
Target Start/End: Complemental strand, 6236460 - 6236267
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||||||||||||| || | | ||||||||||||||||||||| ||||| ||||||||||||  | |||||||||||||||||||||||||||    
T  6236460 tcccagttgccaccacttgggcagttcccttctctcaagaagctttccatatcaggatgtcatggaataacgttcattggttcagagttttgcggctata 6236361  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttcccttt 280  Q
    |||||| ||||||||||||||||||||||||||| ||| |  || || | |||||||||||||||| ||||||||||| || ||||||||||||    
T  6236360 attcatcaaatgttccatttagatcccttgaaacattgtgttttaagaacatgtctgaatggaaggtatggttatgtcgtggaggtttcccttt 6236267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 6881251 - 6881053
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    |||||||||||||| |||||| || |||  ||||||||||||  |||||||||| ||||| |||||||||| || |||||| ||||||||  ||||||||    
T  6881251 tcccagttgccaccgcttgggcagtttccctctctcaagaagtgttccatttcaagctgtgatggaatagaaattattggtacagagtttctcggctata 6881152  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||||| | |||||||||||||||||||||||||||||||  ||||  | ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6881151 attcatcagatgttccatttagatcccttgaaactttgcgatttgaaaacatggctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 6881053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 6915836 - 6915638
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    ||||||||||| ||||||||| || | |  ||||||||||||||||  |||||||||||| |||||||||| ||||||||| ||||||| |  ||||| |    
T  6915836 tcccagttgccgccacttgggcagttcccctctctcaagaagctttttatttcaggctgtgatggaatagaaatcattggtacagagttctatggctaca 6915737  T
Q  187 attcattaaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    |||||| ||||||| |||||| ||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  6915736 attcatcaaatgtttcatttaaatcccttgaaactttgcgatttgagcacatgtccgaatggaaggaatggttatgtcttgaatgtttccctttgcttc 6915638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 285
Target Start/End: Original strand, 6850603 - 6850770
Alignment:
Q  117 tctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctataattcattaaatgttccatttagatcccttg 216  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||| ||||||||    
T  6850603 tctctcaagaatctttccatttcaggctgtgatggaatagagatcattggtccagagttttacggctacaattcatcaaatgttccatttaaatcccttg 6850702  T
Q  217 aaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 285  Q
    ||||||||||  ||| ||| |||||||| |||||||||||| |||  ||||||||||||||||| ||||    
T  6850703 aaactttgcgatttgggcacatgtctgagtggaaggaatgg-tatcccttgaaggtttccctttacttc 6850770  T

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Target: chr3; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6141176 - 6141108
Alignment:
Q  19 aagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6141176 aagcacgtgtctcggtcttggaggctcttcaaccaaatagaaacctcatgaggctcaccatcaatgact 6141108  T

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Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6167781 - 6167713
Alignment:
Q  19 aagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6167781 aagcacgtctcttggtcttggaggctcttcaaccaaatagaaatctcatgaggctcaccatcaatgact 6167713  T

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Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 283
Target Start/End: Complemental strand, 5297473 - 5297284
Alignment:
Q  94 tgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctataattcatt 193  Q
    |||||||||||||| ||||  | ||||||||  | ||||| ||||||||||| ||||||||||||| ||||||   |||||||| |||  | || ||||     
T  5297473 tgccaccacttgggcagctctgctctctcaaagaactttcaatttcaggctgccatggaatagagagcattggcaaagagttttacggaaacaactcatc 5297374  T
Q  194 aaatgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgct 283  Q
    ||||||| | || || ||||| | || ||||||  ||||| | |||||||||||||| || ||||||||| ||  |||||||||||||||    
T  5297373 aaatgttgcgttcaggtccctcgcaattttgcgatttgagaaaatgtctgaatggaaagattggttatgtgttacaggtttccctttgct 5297284  T

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Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6258092 - 6258024
Alignment:
Q  19 aagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||| |||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  6258092 aagcacgtgtatcggtcttggaggctcttcaacctaatagaaacctcatgaggctcaccatcaatgact 6258024  T

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Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 5262518 - 5262399
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctata 186  Q
    |||| |||||||||||||||| ||||||  ||||| ||  ||||||| |||||||  ||| |||||||||||||||| |||  ||||||||  |||||||    
T  5262518 tcccggttgccaccacttgggaagcttccctctcttaaagagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctata 5262419  T
Q  187 attcattaaatgttccattt 206  Q
    |||||| || ||||||||||    
T  5262418 attcatcaactgttccattt 5262399  T

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Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 5279392 - 5279276
Alignment:
Q  89 ccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcggctataat 188  Q
    |||||| |||||||||||| ||||||  ||||| ||| ||||||| |||||||  ||| ||||||||||||| || |||  ||||||||  |||||||||    
T  5279392 ccagtttccaccacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagttttatggctataat 5279293  T
Q  189 tcattaaatgttccatt 205  Q
    |||| || |||||||||    
T  5279292 tcatcaactgttccatt 5279276  T

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Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6264575 - 6264507
Alignment:
Q  19 aagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    |||||||| ||| ||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||    
T  6264575 aagcatgtttctcggtcttggaggctctgcgaccaaatagaaatctcacgaggctcagcatcaatgact 6264507  T

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Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 13271692 - 13271760
Alignment:
Q  19 aagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||| |||||| ||||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||    
T  13271692 aagcacgtgtctcggtcttggaagctcttcaaccaaatagacacctcatgagactcaccatcaatgact 13271760  T

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Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 6723232 - 6723286
Alignment:
Q  33 gtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  6723232 gtcttggaggctcttcaaccaaataaaaacctcatgaggctcaccatcaaagact 6723286  T

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Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 6244168 - 6244115
Alignment:
Q  34 tcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  6244168 tcttggaggctcttcaaccaaatagtaacctcgtgaggctcaccatcaatgact 6244115  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 6915976 - 6915923
Alignment:
Q  34 tcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  6915976 tcttggaggctcttcaaccaaatagaaatctcatgaggctcaccatcaaagact 6915923  T

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Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 4390320 - 4390408
Alignment:
Q  196 atgttccatttagatcccttgaaactttgcgggttgagcatatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgctt 284  Q
    |||||||||| || | |||||||| ||||||  ||||| | |||||  | |||||||||||||||||| ||||||||||||||||||||    
T  4390320 atgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgctt 4390408  T

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Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 6881392 - 6881338
Alignment:
Q  33 gtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||| ||||    
T  6881392 gtcttggaggctcttcaaccaaatataaacctcacgagtctaaccatcaaagact 6881338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6236616 - 6236547
Alignment:
Q  18 aaagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    |||||| |||||| | ||||||||||||||| |||||||||||| |||| |||||||  |||||||||||    
T  6236616 aaagcacgtgtctcgatcttggaggctcttcgaccaaatagaaatctcatgaggctcggcatcaatgact 6236547  T

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Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6898979 - 6898910
Alignment:
Q  18 aaagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    |||||| ||||||  ||||| ||||||||||||||||||| |||||||| |||||| |||||||| ||||    
T  6898979 aaagcacgtgtctctgtcttagaggctcttcaaccaaatataaacctcatgaggctaaccatcaaagact 6898910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 6592517 - 6592560
Alignment:
Q  44 tcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  6592517 tcttcaaccaaatagaaacctcatgaggctcaccatcaaagact 6592560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 6850433 - 6850487
Alignment:
Q  33 gtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    |||||||| ||||||||||||||| ||||||||| |||||| |||||||| ||||    
T  6850433 gtcttggaagctcttcaaccaaatggaaacctcatgaggctaaccatcaaagact 6850487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 7748878 - 7748824
Alignment:
Q  33 gtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||| |||||||| ||||||||||||||||||| |||||| |||||||| ||||    
T  7748878 gtcttagaggctctccaaccaaatagaaacctcatgaggctaaccatcaaagact 7748824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 5248859 - 5248814
Alignment:
Q  119 tctcaagaagctttccatttcaggctgtcatggaatagagatcatt 164  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||    
T  5248859 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 5248814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 8588610 - 8588563
Alignment:
Q  33 gtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatc 80  Q
    |||||||||||||||||||||||||||||| | | |||||| ||||||    
T  8588610 gtcttggaggctcttcaaccaaatagaaacttgaagaggcttaccatc 8588563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 5266655 - 5266617
Alignment:
Q  246 tggaaggaatggttatgtcttgaaggtttccctttgctt 284  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  5266655 tggaaggaatggttatgtgttgaaagtttccctttgctt 5266617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 8570111 - 8570159
Alignment:
Q  33 gtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatca 81  Q
    |||||||| ||||||||||||||||| ||| | | ||||||||||||||    
T  8570111 gtcttggatgctcttcaaccaaatagcaacttgaagaggctcaccatca 8570159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 35141508 - 35141576
Alignment:
Q  19 aagcatgtgtcttggtcttggaggctcttcaaccaaatagaaacctcacgaggctcaccatcaatgact 87  Q
    ||||||||||||  || |||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  35141508 aagcatgtgtctcagtgttggagtctcttcagccaaatagaaacctcatgaggctcaccatcaatgact 35141576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 905 - 825
Alignment:
Q  87 tcccagttgccaccacttggggagcttcgttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggt 167  Q
    ||||| || |||||||||||| |||||| |||||||||||| ||||| ||||||   ||| |||||||| |||||||||||    
T  905 tcccattttccaccacttgggcagcttccttctctcaagaatctttctatttcatattgtgatggaataaagatcattggt 825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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