View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_low_13 (Length: 264)

Name: NF11390_low_13
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_low_13
NF11390_low_13
[»] chr8 (1 HSPs)
chr8 (1-237)||(41294449-41294685)
[»] chr3 (2 HSPs)
chr3 (96-237)||(7755507-7755648)
chr3 (121-237)||(4086182-4086298)
[»] chr5 (2 HSPs)
chr5 (96-194)||(26153224-26153320)
chr5 (14-76)||(10049292-10049354)
[»] chr2 (3 HSPs)
chr2 (116-197)||(2210353-2210435)
chr2 (2-78)||(29712410-29712484)
chr2 (24-96)||(6766463-6766535)
[»] chr4 (2 HSPs)
chr4 (96-237)||(43470872-43471012)
chr4 (17-91)||(41463905-41463978)
[»] chr1 (2 HSPs)
chr1 (13-92)||(19038951-19039030)
chr1 (13-92)||(32153052-32153131)
[»] chr7 (2 HSPs)
chr7 (45-92)||(28904860-28904907)
chr7 (17-84)||(31542260-31542327)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41294685 - 41294449
Alignment:
Q  1 ttaagggtaggtgatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaagaaaa 100  Q
    ||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  41294685 ttaagggaaggggattttctccggtgtgtttctctcaagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttttaggaaaa 41294586  T
Q  101 tgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaag 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41294585 tgcttgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaacccaacaagctagattaaatttctataaag 41294486  T
Q  201 aatataggagtaactaccatctgccaacacttctcag 237  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41294485 aatataggagtaactaccatctgccaacatttctcag 41294449  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 7755507 - 7755648
Alignment:
Q  96 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 195  Q
    ||||||| || |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7755507 gaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacccaacaagctagattaaatttcta 7755606  T
Q  196 taaagaatataggagtaactaccatctgccaacacttctcag 237  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7755607 taaagtatataggagtaactaccatctgccaacacttctcag 7755648  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 4086182 - 4086298
Alignment:
Q  121 agtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccat 220  Q
    |||||||||  |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||| || |||||| |||||    
T  4086182 agtcttgcataaatttagacgaatggtaattattcattttattttcaaaacccaacaagctagattaaatttctatagagtatacagcagtaaccaccat 4086281  T
Q  221 ctgccaacacttctcag 237  Q
    |||||||||||||||||    
T  4086282 ctgccaacacttctcag 4086298  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 26153224 - 26153320
Alignment:
Q  96 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttct 194  Q
    ||||||| || |||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26153224 gaaaatgcttaatgttacga--cacaatcttgcacgaatttagacgaatggtaactattcattttattttcaaaatccaacaagctagattaaatttct 26153320  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 10049292 - 10049354
Alignment:
Q  14 atttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttat 76  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10049292 atttcctccggtgtgtttttctcctgttttttgcagtgtgggaatctacaccattaaatttat 10049354  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 2210435 - 2210353
Alignment:
Q  116 gacacagtcttgcacgaatttatacgaatag-taactattcattttattttcaaaatccaacaagctagattaaatttctata 197  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210435 gacatagtcttgcacgaatttagacgaatgggtaactattcattttattttcaaaatccaacaagctagattaaatttctata 2210353  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 29712410 - 29712484
Alignment:
Q  2 taagggtaggtgatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttatta 78  Q
    |||||| ||| |||||| |||||||| ||||||  | |||||||| |||||||||||||||||||||||||||||||    
T  29712410 taaggggaggggatttcttccggtgtttttctc--ctgttttctgtagtgtgggaatctacaccattaaatttatta 29712484  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 6766463 - 6766535
Alignment:
Q  24 gtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaag 96  Q
    |||||||| ||||| ||||||| | |||||  ||||||||||| ||||  |||||| ||||||||||| ||||    
T  6766463 gtgtgtttttctcctgttttctactgtgtgaaaatctacaccaataaacatattatctctcataatttttaag 6766535  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 43471012 - 43470872
Alignment:
Q  96 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 195  Q
    ||||||| || |||||||||  || |||||||||| |||||| |||||| || |||||| |||||||||  ||||  || ||||||||||||||||||||    
T  43471012 gaaaatgcttaatgttacga--cagagtcttgcacaaatttagacgaatggtgactatttattttatttgtaaaacacagcaagctagattaaatttcta 43470915  T
Q  196 taaagaata-taggagtaactaccatctgccaacacttctcag 237  Q
    ||||| |||  || |||||| ||||||||||||||||||||||    
T  43470914 taaagtatacaagtagtaaccaccatctgccaacacttctcag 43470872  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 41463905 - 41463978
Alignment:
Q  17 tcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataattt 91  Q
    |||||| |||||||| ||| |  ||||||||||||| | ||||||||||||||||| |||||| |||| ||||||    
T  41463905 tcctcccgtgtgtttttcttcgattttctgcagtgtag-aatctacaccattaaatatattatctctcttaattt 41463978  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 19038951 - 19039030
Alignment:
Q  13 gatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 92  Q
    |||||||||| |||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19038951 gatttcctccagtgtgtttttctcttgttttctgcggtgtgggaatctacaacattaaatttattatctctcataatttc 19039030  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 32153131 - 32153052
Alignment:
Q  13 gatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 92  Q
    ||||| |||| |||||||| |||||  ||||| ||| |||||||||||| ||||||||||| ||||| |||| |||||||    
T  32153131 gatttgctccagtgtgtttttctcctattttccgcaatgtgggaatctaaaccattaaattcattatctctcctaatttc 32153052  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 28904907 - 28904860
Alignment:
Q  45 tgcagtgtgggaatctacaccattaaatttattatatctcataatttc 92  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28904907 tgcagtgtgggaatctacaccattaaatttattatctctcttaatttc 28904860  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 31542327 - 31542260
Alignment:
Q  17 tcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctc 84  Q
    |||||| |||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||| ||||    
T  31542327 tcctcctgtgtgtttttctccagttttctccagtgtggaaatctacaccatcaaatgtattatctctc 31542260  T

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