View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_low_16 (Length: 226)
Name: NF11390_low_16
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_low_16 |
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| [»] scaffold0173 (2 HSPs) |
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Alignment Details
Target: scaffold0173 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 7214 - 7068
Alignment:
| Q |
63 |
tttacctaacggagttgaagggttttggagtgttttcgtttgcgttggtggagattgtgatttctcactccttcgttgcgtgaaatagaatctctt---- |
158 |
Q |
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| T |
7214 |
tttacctaacggagttgaagggttttggagtgttttcgtttgcgttggtggagattgtgatttctcactcctccgttgcgtgaaatagaatcgcttctac |
7115 |
T |
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| Q |
159 |
----gaaattagaattcgaatgaaccctcttcctatttttcaccacc |
201 |
Q |
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| T |
7114 |
tatagaaattagaattcgaatgaaccctcttcttatttttcaccacc |
7068 |
T |
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Target: scaffold0173; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 21105 - 21047
Alignment:
| Q |
63 |
tttacctaacggagttgaagggttttggagtgttttcgtttgcgttggtggagattgtg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21105 |
tttacctaacggagttgaagggttttggagtgttttcgtttgcgttggtggagattgtg |
21047 |
T |
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