View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_low_19 (Length: 215)

Name: NF11390_low_19
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_low_19
NF11390_low_19
[»] chr7 (6 HSPs)
chr7 (13-200)||(4862574-4862761)
chr7 (14-200)||(4785079-4785265)
chr7 (14-200)||(4817508-4817694)
chr7 (13-169)||(4713341-4713497)
chr7 (13-200)||(4698434-4698621)
chr7 (13-169)||(4854711-4854867)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 4862574 - 4862761
Alignment:
Q  13 ccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862574 ccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaat 4862673  T
Q  113 cttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862674 cttttatgaacggatctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt 4862761  T

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Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 4785265 - 4785079
Alignment:
Q  14 caacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatc 113  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4785265 caaccacatcactcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatc 4785166  T
Q  114 ttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt 200  Q
    ||| |||||||| || ||||| ||||||||||  | |||||||||||||||| |||||||||||||  | ||||| |||||||||||    
T  4785165 tttaatgaacgggtccaccatatcttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttctt 4785079  T

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Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 4817694 - 4817508
Alignment:
Q  14 caacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatc 113  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4817694 caaccacatcactcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatc 4817595  T
Q  114 ttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt 200  Q
    ||| |||||||| || ||||| ||||||||||  | |||||||||||||||| |||||||||||||  | ||||| |||||||||||    
T  4817594 tttaatgaacgggtccaccatatcttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttctt 4817508  T

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Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 4713497 - 4713341
Alignment:
Q  13 ccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaat 112  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |    
T  4713497 ccaaccacatcactcatagacattcgttgatttccatcaccatgcaaacaactcaacaccatttcacaataacatttcaaacactcacttgttatagagt 4713398  T
Q  113 cttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacattttt 169  Q
    | ||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||    
T  4713397 cctttatgaacgggtccaccatctcttcaactatcacaccttcattgtaacattttt 4713341  T

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Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 4698621 - 4698434
Alignment:
Q  13 ccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaat 112  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||| ||||||| ||| | ||| |||   ||||||||||    
T  4698621 ccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacaccatttggcaataactttttagacattcagccgttatagaat 4698522  T
Q  113 cttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt 200  Q
    | ||||||||||| || ||||||||||| || || |||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  4698521 cctttatgaacgggtccaccatctcttcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttctt 4698434  T

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Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 4854867 - 4854711
Alignment:
Q  13 ccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaat 112  Q
    ||||| ||||||||||| ||||| ||||||||||||||  ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |    
T  4854867 ccaaccacatcactcatagacatccgttgatttccatcaccatgcaaacaactcaacaccatttgacaataaaatttcaaacactcacttgttatagagt 4854768  T
Q  113 cttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacattttt 169  Q
    | |||||||| || || ||||||||||||| ||| || |||||||||||||||||||    
T  4854767 cctttatgaatgggtccaccatctcttcaactatcactccttcattgtaacattttt 4854711  T

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