View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_low_2 (Length: 636)

Name: NF11390_low_2
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_low_2
NF11390_low_2
[»] chr5 (2 HSPs)
chr5 (425-626)||(41663147-41663348)
chr5 (460-530)||(41660202-41660272)
[»] chr1 (7 HSPs)
chr1 (429-626)||(40805933-40806130)
chr1 (430-626)||(38617133-38617329)
chr1 (430-530)||(38614784-38614884)
chr1 (429-530)||(40808386-40808487)
chr1 (452-530)||(41131438-41131515)
chr1 (435-484)||(35201498-35201547)
chr1 (435-484)||(35202376-35202425)
[»] chr8 (4 HSPs)
chr8 (430-626)||(42489042-42489238)
chr8 (430-530)||(42486736-42486836)
chr8 (435-549)||(25922232-25922348)
chr8 (597-629)||(25922372-25922404)
[»] chr7 (7 HSPs)
chr7 (25-106)||(22632531-22632612)
chr7 (25-106)||(22626609-22626690)
chr7 (24-151)||(23249852-23249979)
chr7 (25-107)||(23326044-23326126)
chr7 (25-111)||(23367148-23367234)
chr7 (23-103)||(23334747-23334827)
chr7 (25-69)||(23321527-23321571)
[»] chr2 (1 HSPs)
chr2 (430-470)||(39529831-39529871)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 425 - 626
Target Start/End: Complemental strand, 41663348 - 41663147
Alignment:
Q  425 ctaacgagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcag 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41663348 ctaacgagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcag 41663249  T
Q  525 atttaataatcaacttaaatcatttattttaaaacttaaaaatcgaattttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttct 624  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41663248 atttaataatcaacttaaatcatttattttaaaaattaaaaattgaattttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttct 41663149  T
Q  625 tc 626  Q
    ||    
T  41663148 tc 41663147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 460 - 530
Target Start/End: Original strand, 41660202 - 41660272
Alignment:
Q  460 atggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagatttaa 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41660202 atggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagatttaa 41660272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 429 - 626
Target Start/End: Original strand, 40805933 - 40806130
Alignment:
Q  429 cgagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattt 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40805933 cgagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattt 40806032  T
Q  529 aataatcaacttaaatcatttattttaaaacttaaaaatcgaattttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttcttc 626  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40806033 aataatcaacttaaatcatttattttaaaaattaaaaatcgaattttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttcttc 40806130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 430 - 626
Target Start/End: Complemental strand, 38617329 - 38617133
Alignment:
Q  430 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38617329 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcaaattta 38617230  T
Q  530 ataatcaacttaaatcatttattttaaaacttaaaaatcgaattttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttcttc 626  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38617229 ataatcaacttaaatcatttattttaaaaattaaaaatcgaattttttcaaatcctatcctctctcatcatcttcgtaaaacgcttttcccttcttc 38617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 430 - 530
Target Start/End: Original strand, 38614784 - 38614884
Alignment:
Q  430 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 529  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38614784 gagttcagatcctcttcatttggagggtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 38614883  T
Q  530 a 530  Q
    |    
T  38614884 a 38614884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 429 - 530
Target Start/End: Complemental strand, 40808487 - 40808386
Alignment:
Q  429 cgagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattt 528  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40808487 cgagttcagatcctctccatttggagggtaaatgaccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcaaattt 40808388  T
Q  529 aa 530  Q
    ||    
T  40808387 aa 40808386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 530
Target Start/End: Original strand, 41131438 - 41131515
Alignment:
Q  452 gagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagatttaa 530  Q
    |||| |||||||| | ||| |||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  41131438 gagaataaatggcaacctctctttcctttcatatccaagtgatatgtggtt-aaatgaaaatcaatggctcagatttaa 41131515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 35201498 - 35201547
Alignment:
Q  435 cagatcctctccatttggagagtaaatggccatctccctttactttcata 484  Q
    |||||||||||||||||| |||||||||||||||||  ||| ||||||||    
T  35201498 cagatcctctccatttggggagtaaatggccatctcaatttcctttcata 35201547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 35202425 - 35202376
Alignment:
Q  435 cagatcctctccatttggagagtaaatggccatctccctttactttcata 484  Q
    |||||||||||||||||| ||| |||||||||||||  ||| ||||||||    
T  35202425 cagatcctctccatttggtgaggaaatggccatctcaatttcctttcata 35202376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 4e-95; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 430 - 626
Target Start/End: Complemental strand, 42489238 - 42489042
Alignment:
Q  430 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 529  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42489238 gagttcagatcctcttcatttggagagtaaatggtcatcttcctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 42489139  T
Q  530 ataatcaacttaaatcatttattttaaaacttaaaaatcgaattttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttcttc 626  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42489138 ataatcaacttaaatcatttattttaaaaattaaaaatcgatttttttcagatcctatcctctctcatcatcttcgtaaaacgcttttcccttcttc 42489042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 430 - 530
Target Start/End: Original strand, 42486736 - 42486836
Alignment:
Q  430 gagttcagatcctctccatttggagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 529  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42486736 gagttcagatcctctccatttggagggtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagattta 42486835  T
Q  530 a 530  Q
    |    
T  42486836 a 42486836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 435 - 549
Target Start/End: Original strand, 25922232 - 25922348
Alignment:
Q  435 cagatcctctccatttg---gagagtaaatggccatctccctttactttcatatccaactgacatgtggtttaaatgaaaatcaatggctcagatttaat 531  Q
    ||||||||||||||||    ||||||||||||| ||||| |||| ||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||    
T  25922232 cagatcctctccattttagagagagtaaatggcaatctctctttcctttcatatccaactgacacgtg-tttaattgaaaatcaatggctcagatctaat 25922330  T
Q  532 aatcaacttaaatcattt 549  Q
    ||| ||||||||| ||||    
T  25922331 aataaacttaaattattt 25922348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 629
Target Start/End: Original strand, 25922372 - 25922404
Alignment:
Q  597 tcatcttcgtaaaacgcttttcccttcttctct 629  Q
    ||||||||||||||| |||||||||||||||||    
T  25922372 tcatcttcgtaaaacacttttcccttcttctct 25922404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 22632612 - 22632531
Alignment:
Q  25 atattgatggctgctttgacttcaacatctgctctaacaaatggtttagcacacttgttaactgaagttaaggaggagaaat 106  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||| || ||| ||| |||||||||||||||||||||||    
T  22632612 atattgaaggctgctttgacttcaacttctgctctaacaaatggtttggctcacatgtgaactgaagttaaggaggagaaat 22632531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 22626609 - 22626690
Alignment:
Q  25 atattgatggctgctttgacttcaacatctgctctaacaaatggtttagcacacttgttaactgaagttaaggaggagaaat 106  Q
    ||||||| |||| ||||||| ||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||    
T  22626609 atattgaaggcttctttgacatcaacatctgccctaacaaatggtttggctcacatgttaactgaagttaaggaggagaaat 22626690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 23249979 - 23249852
Alignment:
Q  24 tatattgatggctgctttgacttcaacatctgctctaacaaatggtttagcacacttgttaactgaagttaaggaggagaaataagaatcaatgttaagt 123  Q
    |||||| |||||||||||| ||||||  | | |||||||||||||| |||| || ||||||||||||||||||| ||| |||| |||||  | || ||||    
T  23249979 tatattaatggctgctttggcttcaatgttttctctaacaaatggtctagctcagttgttaactgaagttaaggtggaaaaatgagaattgaagtgaagt 23249880  T
Q  124 atgttagatgaaagtttgtgacagacaa 151  Q
    ||| |||||| |||||||| ||||||||    
T  23249879 atgatagatggaagtttgtaacagacaa 23249852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 23326126 - 23326044
Alignment:
Q  25 atattgatggctgctttgacttcaacatctgctctaacaaatggtttagcacacttgttaactgaagttaaggaggagaaata 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  | || ||  ||||||| ||||||||||||||||||||    
T  23326126 atattgaaggctgctttgacttcaacatctgctctaacaaatggacttgctcatctgttaaccgaagttaaggaggagaaata 23326044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 23367148 - 23367234
Alignment:
Q  25 atattgatggctgctttgacttcaacatctgctctaacaaatggtttagcacacttgttaactgaagttaaggaggagaaataagaa 111  Q
    ||||||| ||||||||| |||||||||||||| || ||||||||| |||| ||| | ||||||||||||||||||||||||| ||||    
T  23367148 atattgaaggctgctttaacttcaacatctgcacttacaaatggtctagctcaccttttaactgaagttaaggaggagaaatgagaa 23367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 23334827 - 23334747
Alignment:
Q  23 gtatattgatggctgctttgacttcaacatctgctctaacaaatggtttagcacacttgttaactgaagttaaggaggaga 103  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||| | || |||||  ||||||||||||| |||||||    
T  23334827 gtatattgagggcagctttgacttcaacatctgctctaacaaatggtcttgctcacttcataactgaagttaaagaggaga 23334747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 23321571 - 23321527
Alignment:
Q  25 atattgatggctgctttgacttcaacatctgctctaacaaatggt 69  Q
    |||||||  |||||||| || ||||||||||||||||||||||||    
T  23321571 atattgaaagctgctttaacctcaacatctgctctaacaaatggt 23321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 39529831 - 39529871
Alignment:
Q  430 gagttcagatcctctccatttggagagtaaatggccatctc 470  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  39529831 gagtccagatcctctccatttggtgagtaaatggcaatctc 39529871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University