View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_low_3 (Length: 626)
Name: NF11390_low_3
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 269 - 603
Target Start/End: Original strand, 8954870 - 8955206
Alignment:
| Q |
269 |
tcaagagggaatcaatctcaaacatcaaacccatggtttcacccattgaaaaccaattgaatgacaccaggctcatgaagcgctgactttgtgcgataaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8954870 |
tcaagagggaatcaatctcaaacatcaaacccatggtttcacccattgaaaaccaattgaatgacaccaggctcatgaagcgctgactttgtgcgataaa |
8954969 |
T |
|
| Q |
369 |
aacat--ggttccgcccgtgctcaacgtatgactcaagcgtccataacatcaattaataacaaattttattcaattactttcatatgaatacatgcatat |
466 |
Q |
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||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8954970 |
aacatatggttccgcccgtgctcaacgtacgactcaaacgtccataacatcaattaataacaaattttattcaattactttcataggaatacatgcatat |
8955069 |
T |
|
| Q |
467 |
nnnnnnntagaatctctcaatcagggatttttgaatgaaatcattacaagggtagaatactcctacaatgatgagatcataaagggaatacggaatcctc |
566 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
8955070 |
aaaaaaatagaatctctcaatcaaggatttttgaatgaaatcattacaagggtagaatactcctacaatgataagatcatgaagggaatatggaatcctc |
8955169 |
T |
|
| Q |
567 |
atttttacgagtaatcttttatttatacctatgcttc |
603 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
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| T |
8955170 |
atttttatgagtaatcttttatttatacctatgcttc |
8955206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 8948517 - 8948726
Alignment:
| Q |
19 |
tgttggaggatggtagtggataaagagggtctatggtttagagttctaactgcttgatatggtggggttgagggacggcttcagccttgtgatcgggatg |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8948517 |
tgttggaggatggtagtggatagagagggtctatggtttagagttctaactgcttgatatggtggggttgagggacggcttcagctttgtgatcgggatg |
8948616 |
T |
|
| Q |
119 |
ggtcagtgtggtggaaggacaatgttagtattcatgatgagagtggtacaatgttgggaagttggttttctgacaacttac-gcttagagttggtaatgg |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
8948617 |
ggtcagtgtggtggaaggacattgttagtattcatgatgggagttgtacaatgttgggaagttggttttctgacaacttacaccttagagtcggtaatgg |
8948716 |
T |
|
| Q |
218 |
tgttaacacc |
227 |
Q |
| |
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|||||||||| |
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| T |
8948717 |
tgttaacacc |
8948726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 24573760 - 24573551
Alignment:
| Q |
19 |
tgttggaggatggtagtggataaagagggtctatggtttagagttctaactgcttgatatggtggggttgagggacggcttcagccttgtgatcgggatg |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| | |||||||||||| | ||||| ||||||||||||||||||| ||||||||||| ||| |||||||| |
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|
| T |
24573760 |
tgttggaggatggtagtggatagagatggtttgtggtttagagttttgtctgctagatatggtggggttgaggggcggcttcagccctgtagtcgggatg |
24573661 |
T |
|
| Q |
119 |
ggtcagtgtggtggaaggacaatgttagtattcatgatgagagtggtacaatgttgggaagttggttttctgacaacttacg-cttagagttggtaatgg |
217 |
Q |
| |
|
||||||||||||||||||| | ||| | |||||||||| ||| || || ||||||| ||||||||||| |||||||| || |||||||| |||||||| |
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| T |
24573660 |
ggtcagtgtggtggaaggatattgtcaatattcatgatcgcagtagttcagtgttggggagttggttttcagacaacttgcgtcttagagtcggtaatgg |
24573561 |
T |
|
| Q |
218 |
tgttaacacc |
227 |
Q |
| |
|
|||||||||| |
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|
| T |
24573560 |
tgttaacacc |
24573551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 29133507 - 29133301
Alignment:
| Q |
22 |
tggaggatggtagtggataaagagggtctatggtttagagttctaactgcttgatatggtggggttgagggacggcttcagccttgtgatcgggatgggt |
121 |
Q |
| |
|
||||||||||| ||||||| ||||||| | |||||||||||| | ||||| ||||||||||||||||||| ||||||||||| |||| |||||| || | |
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| T |
29133507 |
tggaggatggtggtggatagagagggtttgtggtttagagttttgtctgctagatatggtggggttgaggggcggcttcagccctgtggtcgggagggtt |
29133408 |
T |
|
| Q |
122 |
cagtgtggtggaaggacaatgttagtattcatgatgagagtggtacaatgttgggaagttggttttctgacaacttacg-cttagagttggtaatggtgt |
220 |
Q |
| |
|
|||||||||||||||| | || ||||||| ||||| ||| || | ||||||||||||||||||| |||| ||| || |||||| ||||||||||||| |
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| T |
29133407 |
cagtgtggtggaaggatattgccagtattcgtgatggaagtagttcgatgttgggaagttggtttttagacagcttgcgtcttagacttggtaatggtgt |
29133308 |
T |
|
| Q |
221 |
taacacc |
227 |
Q |
| |
|
| ||||| |
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|
| T |
29133307 |
tgacacc |
29133301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 33260189 - 33260398
Alignment:
| Q |
19 |
tgttggaggatggtagtggataaagagggtctatggtttagagttctaactgcttgatatggtggggttgagggacggcttcagccttgtgatcgggatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| | |||||| |||||| ||||||||||||||| ||| || |||||| |||||| | | ||| |
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| T |
33260189 |
tgttggaggatggtagtggataaaaaggggttttggttcatagttctgactgctagatatggtggggttggggggcgacttcagtcttgtggtagttatg |
33260288 |
T |
|
| Q |
119 |
ggtcagtgtggtggaaggacaatgttagtattcatgatgagagtggtacaatgttgggaagttggttttctgacaacttacg-cttagagttggtaatgg |
217 |
Q |
| |
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||||||||||||||||||| | ||| |||| | ||||| ||| || | ||||||| ||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
33260289 |
ggtcagtgtggtggaaggatattgtctgtatccgtgatggcagtagttcggtgttggggagttggttttcagacaacttacgtcttagagtcggtaatgg |
33260388 |
T |
|
| Q |
218 |
tgttaacacc |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
33260389 |
tgttaacacc |
33260398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 33280348 - 33280557
Alignment:
| Q |
19 |
tgttggaggatggtagtggataaagagggtctatggtttagagttctaactgcttgatatggtggggttgagggacggcttcagccttgtgatcgggatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| | |||||| |||||| ||||||||||||||| ||| || |||||| |||||| | | ||| |
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|
| T |
33280348 |
tgttggaggatggtagtggataaaaaggggttttggttcatagttctgactgctagatatggtggggttggggggcgacttcagtcttgtggtagttatg |
33280447 |
T |
|
| Q |
119 |
ggtcagtgtggtggaaggacaatgttagtattcatgatgagagtggtacaatgttgggaagttggttttctgacaacttacg-cttagagttggtaatgg |
217 |
Q |
| |
|
||||||||||||||||||| | ||| |||| | ||||| ||| || | ||||||| ||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
33280448 |
ggtcagtgtggtggaaggatattgtctgtatccgtgatggcagtagttcggtgttggggagttggttttcagacaacttacgtcttagagtcggtaatgg |
33280547 |
T |
|
| Q |
218 |
tgttaacacc |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
33280548 |
tgttaacacc |
33280557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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