View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_low_6 (Length: 458)
Name: NF11390_low_6
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 237 - 443
Target Start/End: Original strand, 27027687 - 27027892
Alignment:
| Q |
237 |
tatattttcgttttttcgaattggctgggagaaaaactagcgaatgaatagttttccaaacctaaaacaagtttgggccttaaacttttggaacagccca |
336 |
Q |
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| T |
27027687 |
tatattttagttttttcgaagtggttgagagaaaaactagcgaatgaatagttttccaaacctaaaacaagtttgggccttaa-cttttggaacagccca |
27027785 |
T |
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| Q |
337 |
aacttattcatgcaaaaataggtcatttctcgaacaaattcctgctgaataaccattgacatccctaattccaattccaattccaattccaatttcatac |
436 |
Q |
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| T |
27027786 |
aacttattcatgcaaaaataggtcatttctcaaacaaattccagctgaataaccattgacatccctaattccaattccaattccaattccaatttcatac |
27027885 |
T |
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| Q |
437 |
aataatt |
443 |
Q |
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||||||| |
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| T |
27027886 |
aataatt |
27027892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 27024296 - 27024431
Alignment:
| Q |
100 |
catcataaaagttgaggattatgctaaactgtaaagtttggcttcaagtgcaactagccccaatgacacttaattatcgttgatggaacggtaattaact |
199 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
27024296 |
catcataaaagttgaggattatgccaaaccttgaagtttggcttcaagtgcaactagccccaatgacaattaattattgttgatggaacggtaattaact |
27024395 |
T |
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| Q |
200 |
ttcatttaaggtcaaacgaccattaactatccttaa |
235 |
Q |
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| T |
27024396 |
ttcatttaagatcaaacgacaattaactatccttaa |
27024431 |
T |
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