View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11390_low_7 (Length: 455)

Name: NF11390_low_7
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11390_low_7
NF11390_low_7
[»] chr7 (5 HSPs)
chr7 (211-445)||(22684112-22684348)
chr7 (4-170)||(22684389-22684556)
chr7 (211-318)||(22695722-22695831)
chr7 (372-445)||(22695522-22695596)
chr7 (53-105)||(23423220-23423271)
[»] chr3 (2 HSPs)
chr3 (55-95)||(14782856-14782896)
chr3 (55-95)||(9198640-9198680)
[»] chr6 (1 HSPs)
chr6 (53-95)||(10764084-10764126)
[»] chr8 (2 HSPs)
chr8 (55-100)||(26456448-26456492)
chr8 (59-123)||(14226973-14227036)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 211 - 445
Target Start/End: Complemental strand, 22684348 - 22684112
Alignment:
Q  211 agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22684348 agaaacacatcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgc 22684249  T
Q  309 tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22684248 tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa 22684149  T
Q  409 ttaatgctttatttgtttaaatttaccacaggttctg 445  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22684148 ttaatgctttatttgttcaaatttaccacaggttctg 22684112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 22684556 - 22684389
Alignment:
Q  4 cttctgatgaaa-gcgtctctggtgtctgacatggatacgacatcgatcaacacatgtgattacgttcaattaactcatattttcaaatttttcaccaat 102  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  |    
T  22684556 cttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatgtgattacgttcaattaactcatattttcaaatttttcacccgt 22684457  T
Q  103 gtcaatgtgtctgtgtcagtgttgatttgccgtgtccttgtttgtggaagtgcttcataggtgcattg 170  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22684456 gtcaatgtgtctgtgtcagtgtcgatttgtcgtgtccttgtttgtggaagtgcttcataggtgcattg 22684389  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 22695831 - 22695722
Alignment:
Q  211 agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc 308  Q
    ||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||  ||| || |||||||||||||||| |||||||||||    
T  22695831 agaaacacatcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgc 22695732  T
Q  309 tcaagttttg 318  Q
    | ||||||||    
T  22695731 taaagttttg 22695722  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
Q  372 gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg 445  Q
    |||||||||||||||| ||| || ||| | |||| ||||| |||||||||||||| ||||||||  |||||||||    
T  22695596 gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg 22695522  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
Q  53 acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc 105  Q
    |||||||||||||| ||||||||| |||| | ||||||||||| |||||||||    
T  23423220 acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc 23423271  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
Q  55 acatgtgattacgttcaattaactcatattttcaaattttt 95  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  14782856 acatgtgattacgttcaattaattcattttttcaaattttt 14782896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
Q  55 acatgtgattacgttcaattaactcatattttcaaattttt 95  Q
    ||||||||||| |||||||||| |||| |||||||||||||    
T  9198640 acatgtgattatgttcaattaattcattttttcaaattttt 9198680  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
Q  53 acacatgtgattacgttcaattaactcatattttcaaattttt 95  Q
    ||||||| |||||||||||||||| |||| |||||||||||||    
T  10764084 acacatgcgattacgttcaattaattcattttttcaaattttt 10764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
Q  55 acatgtgattacgttcaattaactcatattttcaaatttttcacca 100  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||    
T  26456492 acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca 26456448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 14227036 - 14226973
Alignment:
Q  59 gtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtg 123  Q
    ||||||| |||||||||| |||| ||||||||||||| |   |||||||||||| ||||||||||    
T  14227036 gtgattatgttcaattaattcattttttcaaattttt-attgatgtcaatgtgtatgtgtcagtg 14226973  T

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