View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11390_low_8 (Length: 441)
Name: NF11390_low_8
Description: NF11390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11390_low_8 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 110 - 425
Target Start/End: Original strand, 883523 - 883828
Alignment:
| Q |
110 |
gcgcaaccatataacctttaactctccaaagtcaggggtctcaacttcctcaaacccaaacatctgataactcattcaaatcaacaagtgatatgaagca |
209 |
Q |
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| T |
883523 |
gcgcaaccatataatctttaactctccaaagtcaggggtctcaacttcctcaaacccaaacatctgataactcgttcaaatcaacaagtgatatgaagca |
883622 |
T |
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| Q |
210 |
ggaacacatacacgaacattagacaatcgatacaaataataattttaaaaagttacataattcaatgtgattatatgtgtaagtgctgtgttggtatcaa |
309 |
Q |
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| T |
883623 |
tgaacacatacacgaacattagacaatcgatacaaataataattttaaaaagttacataattcaatgtgactacatttgtcagtgttgtattggtatcaa |
883722 |
T |
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| Q |
310 |
acaagatgagtgtctgagtttcataggctaaatgctaactaacctcttggtagaatttggagagtctttttacgtcggtggactctcgagctatatggtt |
409 |
Q |
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| T |
883723 |
acaagatga----------ttcataggttaaatgctaactaacctcttggtagaatttggagagtctttttacgtcggtggactctcgagctatatggtt |
883812 |
T |
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| Q |
410 |
cagactcactccttct |
425 |
Q |
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| T |
883813 |
cagactcactccttct |
883828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 883420 - 883505
Alignment:
| Q |
1 |
ctaagcggatatgagaggggtctttaacaggaatggaggatgatggagccagctcgccgttgctacgttgtatgagatggataagt |
86 |
Q |
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| T |
883420 |
ctaagcggatatgagaggggtctttaacaggaatggaggatgatggagccagctcgccgttgctatgttgtatgagatggataagt |
883505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 38749615 - 38749571
Alignment:
| Q |
245 |
ataataattttaaaaagttacataattcaatgtgattatatgtgt |
289 |
Q |
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| T |
38749615 |
ataataatttgaaaaaatgacataattcaatgtaattatatgtgt |
38749571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 99900 - 99944
Alignment:
| Q |
245 |
ataataattttaaaaagttacataattcaatgtgattatatgtgt |
289 |
Q |
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| T |
99900 |
ataataattttagaaaataacataattcaatgtaattatatgtgt |
99944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 3677783 - 3677835
Alignment:
| Q |
235 |
atcgatacaaataataattttaaaaagttacataattcaatgtgattatatgt |
287 |
Q |
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||||| |||| ||||||||||||||| | ||||||||| |||| ||||||||| |
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| T |
3677783 |
atcgacacaattaataattttaaaaaatcacataattctatgtaattatatgt |
3677835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 18013125 - 18013077
Alignment:
| Q |
246 |
taataattttaaaaagttacataattcaatgtgattatatgtgtaagtg |
294 |
Q |
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| T |
18013125 |
taataatttaaaaaaattacataattcagtgtaattatatgtgtcagtg |
18013077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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