View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11391_high_1 (Length: 982)

Name: NF11391_high_1
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11391_high_1
NF11391_high_1
[»] chr8 (1 HSPs)
chr8 (1-967)||(5361339-5362306)
[»] chr5 (1 HSPs)
chr5 (643-687)||(26532707-26532751)


Alignment Details
Target: chr8 (Bit Score: 871; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 871; E-Value: 0
Query Start/End: Original strand, 1 - 967
Target Start/End: Complemental strand, 5362306 - 5361339
Alignment:
Q  1 aaaacacagaaaacggcacaatcaatcaacctatgtattgttagaacatttcatatcgctaattattttttgagtgaaaatggtaattcagaaccacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5362306 aaaacacagaaaacggcacaatcaatcaacctatgtattgttagaacatttcatatcgctaattattttttgagtgaaaatggtaattcagaaccacata 5362207  T
Q  101 atcataagagtgggagcctagactatttgccttattttccatgtttggaccacgtaacattagaatcttaataactgagtgaatggttttgaaaagtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5362206 atcataagagtgggagcctagactatttgccttattttccatgtttggaccacgtaacattagaatcttaataactgagtgaatggttttgaaaagtaaa 5362107  T
Q  201 cactaattcagaacagctatcaccacagaattacagattatatgtggaatattctgcatccataacactcaataagtaacaaataacgaaaaatcattag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5362106 cactaattcagaacagctatcaccacagaattacagattatatgtggaatattctgcatccataacactcaataagtaacaaataacgaaaaatcattag 5362007  T
Q  301 ccaaaatgtaatatgaagttacagtgttgttgcctacttaatcatcctgttaaagtcagcaaagttaaaacatagaataccaagaatgaaatttacctcg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5362006 ccaaaatgtaatatgaagttacagtgttgttgcctacttaatcatcctgttaaagtcagcaaagttaaaacatagaataccaagaatgaaatttacctcg 5361907  T
Q  401 caaaaaataatcccgccaagacatgacaacattagtctcaaatttatgagaccaaaaataggtgataaatttcgataaaaccgcttgcattacaaagtgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5361906 caaaaaataatcccgccaagacatgacaacattagtctcaaatttatgagaccaaaaataggtgataaatttcgataaaaccgcttgcattacaaagtgg 5361807  T
Q  501 acagtattcattaaaaagggagctgggaactttcccatatgatctcccaacagacttttattatacctgtttcaaaagatataacaataagagacaaagc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5361806 acagtattcattaaaaagggagctgggaactttcccatatgatctcccaacagacttttattatacctgtttcaaaagatataacaataagagacaaagc 5361707  T
Q  601 ataaaagggtttgcatcataaacactaaaagattttattcattgtaaatatttttacacggtcaataaatcgtaaacgtcaaatcat-nnnnnnnnnnnn 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  5361706 ataaaagggtttgcatcataaacactaaaagattttattcattgtaaatatttttacacggtcaataaatcgtaaacgtcaaatcataaaaaataaaaaa 5361607  T
Q  700 nnnnnncgtttgactataatcataactacttataaaatcatgcatatgagtagctgtgattaattgacagcgtaannnnnnnnngccctgagagtgtatc 799  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||| |||||||||||    
T  5361606 taaaaacgtttgactataatcataactacttataaaatcatgcatatgagtagctgtgattaattgacagcgtaatttttttttgccccgagagtgtatc 5361507  T
Q  800 aaaattaaactccaatataaatgccaacaaagaccaacagtgtaaacgaggaacttacaaggtcaaaaataaactgaaggtgtaccacacaaatatgaaa 899  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5361506 aaaattaaactccaatataaacgccaacaaagaccaacagtgtaaacgaggaacttacaaggtcaaaaataaactgaaggtgtaccacacaaatatgaaa 5361407  T
Q  900 aacatagtcttcaagatatttgctacaggaacagtattttcagagcttttatgaagtgatccaacacc 967  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5361406 aacatagtcttcaagatatttgctacaggaacagtattttcagagcttttatgaagtgatccaacacc 5361339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 643 - 687
Target Start/End: Original strand, 26532707 - 26532751
Alignment:
Q  643 tgtaaatatttttacacggtcaataaatcgtaaacgtcaaatcat 687  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||    
T  26532707 tgtaaatatttttacacggtcaatcaattgtaatcgtcaaatcat 26532751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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