View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_high_14 (Length: 408)
Name: NF11391_high_14
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 13224538 - 13224917
Alignment:
| Q |
20 |
cttagaacactggacattagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttacagtaaca |
119 |
Q |
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| T |
13224538 |
cttagaacactggacatcagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttacagtaaca |
13224637 |
T |
|
| Q |
120 |
gtttcgtaggccctctccccgaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggcaaaatccctcaaagtta |
219 |
Q |
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| T |
13224638 |
gtttcgtaggccctctccccgaagaatttatcaggctaccttttttagaacaccttaacctcggtggaagctacttcagtggcaaaatccctcaaagtta |
13224737 |
T |
|
| Q |
220 |
tggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttgcaacgcttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13224738 |
tggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttacaacgcttg |
13224837 |
T |
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| Q |
320 |
gaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
399 |
Q |
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| T |
13224838 |
gaaatcggatacaactcctactcaggagcaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
13224917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 13149236 - 13148856
Alignment:
| Q |
19 |
acttagaacactggacattagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttacagtaac |
118 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| | | ||| |||||| ||| ||||| ||||| ||| |
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| T |
13149236 |
acttagaacactagacattagccataactctttcaactcaacttttccacctggaatttcgaagttaatatttttaagaacctttaatgcatacagcaac |
13149137 |
T |
|
| Q |
119 |
agtttcgtaggccctctccccgaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggcaaaatccctcaaagtt |
218 |
Q |
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|||||| |||||||| || |||||| | |||||||| || ||||||||| | || | ||| |||||||||||||||| ||| | |||||| | ||| | |
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| T |
13149136 |
agtttcactggccctcttcctgaagaactaatcaggcttccatttctagaaaagctcagccttggtggaagctacttcaatggaagaatcccaccaagct |
13149037 |
T |
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| Q |
219 |
atggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttgcaacgctt |
318 |
Q |
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|||||| ||||||||||||||| || || |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||| || |
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| T |
13149036 |
atggaaatttcaaaagactcaagttcctagatttagctggtaatgcattggaaggcacactaccacctgaactaggcttattatcagagctacaacattt |
13148937 |
T |
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| Q |
319 |
ggaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
399 |
Q |
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| T |
13148936 |
agaaattggatacaacacatattcaggaacactaccagttgaactaacaatgttgtgtagtctaaaatacttagacatctc |
13148856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 399
Target Start/End: Complemental strand, 13315825 - 13315451
Alignment:
| Q |
25 |
aacactggacattagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttacagtaacagtttc |
124 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||| |||||||| || || | ||| |
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| T |
13315825 |
aacactagacataagccataactcattcaactcaactttcccaaagggaatttcaaaactaagattcttaagaatctttaatgcttatagcaataacttc |
13315726 |
T |
|
| Q |
125 |
gtaggccctctccccgaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggcaaaatccctcaaagttatggaa |
224 |
Q |
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|||||||||| || |||||| | | | | | || |||||||| | || ||||| |||| ||||| |||| ||||| |||||| ||||||||||| |
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| T |
13315725 |
ataggccctcttcctgaagaactcaccggatttccatttctagagaagctcaaccttggtgagagctatttcaatggcacaatcccagcaagttatggaa |
13315626 |
T |
|
| Q |
225 |
ctttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttgcaacgcttggaaat |
324 |
Q |
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|| ||||||| || || || ||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
13315625 |
actttgaaagactaaagttcctctatttagctggtaatgcattggaaggttctgtaccacctgaactagggttattatcagagttgcaacatttggaaat |
13315526 |
T |
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| Q |
325 |
cggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
399 |
Q |
| |
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||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||| ||||| || ||||| |
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| T |
13315525 |
tggatacaacaaattttcaggaacactaccagtggaattaacgatgttgtctaatctcaaatacttagacatctc |
13315451 |
T |
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