View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11391_high_17 (Length: 382)

Name: NF11391_high_17
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11391_high_17
NF11391_high_17
[»] chr4 (6 HSPs)
chr4 (1-371)||(46734350-46734720)
chr4 (158-368)||(34104919-34105131)
chr4 (196-330)||(55261611-55261745)
chr4 (231-311)||(8081726-8081806)
chr4 (172-270)||(21393758-21393856)
chr4 (264-330)||(56337951-56338017)
[»] chr1 (3 HSPs)
chr1 (16-367)||(27393842-27394194)
chr1 (274-364)||(48380418-48380510)
chr1 (153-217)||(33576012-33576076)
[»] chr7 (4 HSPs)
chr7 (16-368)||(39474225-39474580)
chr7 (153-368)||(33821864-33822081)
chr7 (153-368)||(23897861-23898078)
chr7 (155-330)||(8753732-8753907)
[»] chr6 (8 HSPs)
chr6 (133-368)||(29824254-29824491)
chr6 (1-60)||(20347795-20347854)
chr6 (156-278)||(17749158-17749280)
chr6 (267-371)||(34117537-34117643)
chr6 (256-330)||(1364693-1364767)
chr6 (193-303)||(29520589-29520699)
chr6 (7-80)||(29824521-29824594)
chr6 (6-70)||(14687203-14687267)
[»] chr5 (8 HSPs)
chr5 (7-280)||(35636985-35637258)
chr5 (36-245)||(34337589-34337798)
chr5 (106-330)||(18893113-18893337)
chr5 (258-371)||(24177191-24177306)
chr5 (159-330)||(34317625-34317796)
chr5 (261-364)||(35636792-35636897)
chr5 (159-216)||(34874787-34874844)
chr5 (294-371)||(27679680-27679759)
[»] chr2 (7 HSPs)
chr2 (39-311)||(33280729-33281001)
chr2 (18-244)||(7300384-7300610)
chr2 (1-80)||(18634836-18634915)
chr2 (6-73)||(32624232-32624299)
chr2 (256-355)||(18634559-18634660)
chr2 (334-371)||(7300256-7300293)
chr2 (6-70)||(144219-144283)
[»] chr8 (3 HSPs)
chr8 (1-299)||(42240078-42240376)
chr8 (195-330)||(7671066-7671201)
chr8 (249-311)||(32095768-32095830)
[»] chr3 (5 HSPs)
chr3 (1-245)||(21548229-21548472)
chr3 (205-371)||(43171392-43171559)
chr3 (12-73)||(4964241-4964302)
chr3 (12-76)||(14307118-14307182)
chr3 (248-292)||(30793596-30793640)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 46734350 - 46734720
Alignment:
1 aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||    
46734350 aatcagcatctcatctgtttcttcattgcgacatttttggttccttgtgacagcatatcaagtcttggattggcgtttcaagagtcaaccctcatagtct 46734449  T
101 ttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttgg 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
46734450 tcgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttctttagcttatatggcttctatgcgtttggctagtttgg 46734549  T
201 aatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
46734550 aatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaatttaaatataattcttattggtggctgaaagctaaca 46734649  T
301 atgtcacttttttgtatggttctcagagattgttcggaccctttgttatgcttgggtatcggctgaccttt 371  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||    
46734650 atgtcacttttgtgtatggttttcagagattgttcggaccctttgttatgcttgaatatcggctgaccttt 46734720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 368
Target Start/End: Complemental strand, 34105131 - 34104919
Alignment:
158 ttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttata 257  Q
    ||||||||| |||  ||||||||| ||| |||| |||||||||||||||||||||||||   || | |||||  | ||||||||||| ||||  |||||     
34105131 ttttcttcaacttccatggcttctttgcatttgactagtttggaatgaacgtaataacaagttcttcaataatgtccaaactcccattatagctcttatg 34105032  T
258 gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgg 355  Q
    || ||||| ||  |||||| | |||||||  |||| || || |||| |  |||| | ||||||||||||||||  || ||||||||||||||||| ||||    
34105031 gaaaaagtgaagcataattttgattggtggttgaaggcgaataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgg 34104932  T
356 gtatcggctgacc 368  Q
    |||||| ||||||    
34104931 gtatcgactgacc 34104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 330
Target Start/End: Complemental strand, 55261745 - 55261611
Alignment:
196 tttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagc 295  Q
    |||||||||  |||||||||||  || |||||||| | |||||| | || | ||||||||| || ||||||||||   ||||||||| ||| ||||||||    
55261745 tttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaattccattcttattcgtggctgaaagc 55261646  T
296 taacaatgtcacttttttgtatggttctcagagat 330  Q
    |||||| | ||||||| ||||||||||||||||||    
55261645 taacaaagccacttttgtgtatggttctcagagat 55261611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 8081806 - 8081726
Alignment:
231 attcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 311  Q
    |||||| || |||| ||||| ||| |||| || ||||||||||| | || |||||| ||||||||||||||||||| ||||    
8081806 attcaagctaccatgatagaacttttagaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaatttt 8081726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 21393758 - 21393856
Alignment:
172 tatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaat 270  Q
    ||||||| || || ||||||||||| ||||||||||||||||| | |||  |||||||   ||| |||||||| | ||||||||| || || |||||||    
21393758 tatggctcctttgtgtttggctagtgtggaatgaacgtaataatagactatttaataattctcacactcccattacagagcttatggataaggttaaat 21393856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 56337951 - 56338017
Alignment:
264 gttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 330  Q
    |||||||||| |||||  ||||| || ||||||||||||| ||||||| | ||||||||||| ||||    
56337951 gttaaatatacttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagat 56338017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 27393842 - 27394194
Alignment:
16 tgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttat 115  Q
    ||||||| ||| |||| || ||||| || || |||||||||  || ||||||| |||| |||||| |||| || || |||||| || |  ||||||||||    
27393842 tgtttctgcatcgcgatatatttggatcattatggcagcatgccaggtcttggtttggtgtttcaggagtagaaccacatagtattcgagatcattttat 27393941  T
116 tcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataac 215  Q
    ||| |||||||| ||  |||||| || |||| |  |  | ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| |||||    
27393942 tcactttactcattatctaggtggtttgaaggcgaggtgctcttttcttcaacttttatggcttctttgcatttggttagtttggaatgaacgttataac 27394041  T
216 atactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgt 315  Q
    ||  |  | ||||| || ||||||||||||||||| ||||  || |||||||| |||| ||||||||||||  |||| ||||| |||||||||||| | |    
27394042 atgttattaaataatatccaaactcccatcatagatctta-ggaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtat 27394140  T
316 atggttctcagagat--tgttcggaccctttgttatgcttgggtatcggctgac 367  Q
    |||| |||||| |||  || |||||||| |||||||||||||||||||||||||    
27394141 atggctctcagtgatggtggtcggacccattgttatgcttgggtatcggctgac 27394194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 48380510 - 48380418
Alignment:
274 attcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgggtatcggct 364  Q
    ||||||||||||| || ||||||||||| | |||| || ||||||||||| ||||||  || |||||| |||||||||| |||||||||||||    
48380510 attcttattggtggctaaaagctaacaacgccactcttgtgtatggttcttagagatggtggtcggactctttgttatgtttgggtatcggct 48380418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 33576076 - 33576012
Alignment:
153 cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacat 217  Q
    ||||| ||||| |||||| |||||||| |||| |||||||  ||||||||||||| |||||||||    
33576076 cgatcgtttctacagcttttatggcttttgtgtgtttggcaggtttggaatgaacataataacat 33576012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 39474225 - 39474580
Alignment:
16 tgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttat 115  Q
    ||||||||||||| |||||||| || || ||||| |||||  ||| || ||||||||  |||||| |||  || || |||||| || |  ||||||| ||    
39474225 tgtttcttcattgtgacattttcggatctttgtgacagcaagtcaggttttggattgatgtttcaggagcagaaccacatagtattcgggatcatttcat 39474324  T
116 tcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataac 215  Q
     ||||||||||| ||  |||||| ||||||| |  |||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
39474325 acagtttactcattatctaggtggttcgaaggcgagacgttcttttcttcaacttttatggcttctttgcgtttggctagtttggaatgaacgtaataac 39474424  T
216 atactcattaataacattcaaactcccatcatagagcttatag-acaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttg 314  Q
    |   || | |||||  | ||||||||||| ||||  ||||| | | ||||| ||  ||||||||||||||||  |||| || || ||   | ||||| |     
39474425 aagttcttcaataatgtccaaactcccattatagctcttatggaaaaaagtgaagcataattcttattggtggttgaaggcgaataacacctcttttata 39474524  T
315 tatggttctcagagat--tgttcggaccctttgttatgcttgggtatcggctgacc 368  Q
    ||||||||||||||||  || |||||||||||||||||||||||||| | ||||||    
39474525 tatggttctcagagatggtggtcggaccctttgttatgcttgggtattgactgacc 39474580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 368
Target Start/End: Original strand, 33821864 - 33822081
Alignment:
153 cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagc 252  Q
    ||||| ||||| |||||| |||||||| |||| |||||||  ||||||||||| ||||||||||   |  |||||||||| |||   ||||| ||  |||    
33821864 cgatcgtttctacagcttttatggcttttgtgagtttggcaggtttggaatgagcgtaataacaggatttttaataacatccaagtccccattattcagc 33821963  T
253 ttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatg 350  Q
    || |||| | |||||||||  | || | |||||| ||||| ||||| |||||||||||  |||| |||||||| |||| ||  |||||||||||| | ||    
33821964 ttttagatagagttaaataccactcattttggtggctgaaggctaataatgtcactttcatgtacggttctcatagatggtagtcggaccctttgatttg 33822063  T
351 cttgggtatcggctgacc 368  Q
     |||||||||| ||||||    
33822064 tttgggtatcgactgacc 33822081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 368
Target Start/End: Complemental strand, 23898078 - 23897861
Alignment:
153 cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagc 252  Q
    ||||| ||||| | |||| |||||||| |||| ||||||| |||||||||||| |||||||||||  |  |||||||||| ||||| ||||| ||  | |    
23898078 cgatcgtttctacggcttttatggcttttgtgtgtttggcaagtttggaatgagcgtaataacatgatttttaataacatccaaacccccattatgcaac 23897979  T
253 ttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatg 350  Q
    || |||| | |||||||||  | || | ||| || |||||   ||| |||||||||||  |||| |||||| | |||| ||  |||||||||||| | ||    
23897978 ttttagatagagttaaataccactcattttgatggctgaagattaataatgtcactttcatgtacggttcttatagatggtagtcggaccctttgatttg 23897879  T
351 cttgggtatcggctgacc 368  Q
     || ||||||||||||||    
23897878 tttaggtatcggctgacc 23897861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 330
Target Start/End: Original strand, 8753732 - 8753907
Alignment:
155 atcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagctt 254  Q
    |||||||||||||||||| |||||  || | || ||| | || |||||||| || |||||||  ||| |||||||||| ||||| || || ||  || ||    
8753732 atcttttcttcagcttatttggctgttgggtgtctggttggtgtggaatgagcgaaataacaagctctttaataacatccaaaccccaattattcagatt 8753831  T
255 atagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 330  Q
     ||||| ||||||||| | |||| |||||||| || |||||||| |||| ||  ||| |||| |||| ||||||||    
8753832 ttagacgaagttaaatttcattcgtattggtggctcaaagctaaaaatgccatgtttgtgtacggttttcagagat 8753907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 133 - 368
Target Start/End: Complemental strand, 29824491 - 29824254
Alignment:
133 taggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcatt-aataaca 231  Q
    |||||| ||||||| |  |||| ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||| |||||||| | | ||| ||||| |    
29824491 taggtggttcgaaggcgagacgctcttttcttcaacttttatggcttctttgcatttggttagtttggaatgaacataataaca-agttattcaataata 29824393  T
232 ttcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat- 330  Q
    | ||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||| ||||  |||| |||||||||||| | ||||| ||||||| ||     
29824392 tccaaactcccatcatagatcttatggaaaaaattaagtataattcttaatggtgattgaagactaataatgtcacttttgtatatggctctcagaaatg 29824293  T
331 -tgttcggaccctttgttatgcttgggtatcggctgacc 368  Q
     || |||| ||| ||||||||||||||||||||||||||    
29824292 gtggtcggtcccattgttatgcttgggtatcggctgacc 29824254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20347854 - 20347795
Alignment:
1 aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatca 60  Q
    ||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||    
20347854 aatcagcatctcatttgtttcttcattgcgacatgtttgattctttgtggcagcatatca 20347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 17749158 - 17749280
Alignment:
156 tcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagctta 255  Q
    |||||| | |||||| | ||||||||| | || ||| ||||||||||||||||||| |||||  |  |||| || | ||||||| || | ||||| |||     
17749158 tcttttatgcagcttttttggcttctgggtgtgtggatagtttggaatgaacgtaacaacatggtatttaagaatactcaaactaccgtgatagatcttt 17749257  T
256 tagacaaagttaaatataattct 278  Q
    |||| ||||||||||||||||||    
17749258 tagaaaaagttaaatataattct 17749280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 34117537 - 34117643
Alignment:
267 aaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatgcttgggtatcggct 364  Q
    ||||||||||||| |||||| |||||||| ||||||| ||  ||| | ||||| ||||||| |||||  ||||||||  | ||||| || ||||||| ||    
34117537 aaatataattctttttggtggctgaaagccaacaatgccaactttgtttatggctctcagatattgtggtcggaccccctattatgtttaggtatcgact 34117636  T
365 gaccttt 371  Q
    |||||||    
34117637 gaccttt 34117643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 1364767 - 1364693
Alignment:
256 tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 330  Q
    ||||||||||||||| | |||| |||||||| || |||||||| |||||||  ||| |||||| |||||| ||||    
1364767 tagacaaagttaaatttcattcgtattggtggcttaaagctaaaaatgtcatgtttctgtatgattctcacagat 1364693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 303
Target Start/End: Complemental strand, 29520699 - 29520589
Alignment:
193 tagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaa 292  Q
    |||||||||||||||| || |||| | |  | || || ||||||||| |||| ||||| ||| |||| || ||||||||||| || | |||||| |||||    
29520699 tagtttggaatgaacgaaacaacaaaatattcaagaatattcaaactaccatgatagaacttttagaaaaggttaaatataactcattttggtggctgaa 29520600  T
293 agctaacaatg 303  Q
    ||| |||||||    
29520599 agcaaacaatg 29520589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 29824594 - 29824521
Alignment:
7 catctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttca 80  Q
    |||||||| ||||| | ||||| || |||||||| ||||||||||||||| |||  |||||| |||| ||||||    
29824594 catctcatttgtttttgcattgtgatatttttggatccttgtggcagcatgtcagatcttggtttggtgtttca 29824521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 14687203 - 14687267
Alignment:
6 acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggat 70  Q
    ||||||||||| ||| ||||||||  || ||||||||| |||||||| | ||||| |||||||||    
14687203 acatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggat 14687267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 35637258 - 35636985
Alignment:
7 catctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtca 106  Q
    |||||||| ||||||||||||||||||| ||||| ||||| | ||||||| ||| |||||||||||| |||| | || | || || || ||||| ||| |    
35637258 catctcatttgtttcttcattgcgacatgtttggctccttatagcagcatgtcaggtcttggattggtgttttaggactagatcctcagagtctctgtga 35637159  T
107 tcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaa 206  Q
    ||||||||||||||| ||| | ||  |||||| |||||   ||| ||||||||||||||| ||| ||||  | || || ||||| |||||||||| ||||    
35637158 tcattttattcagttcacttattatctaggtggttcgagagctcaacgatcttttcttcaccttttatgtttgctttgtgtttgactagtttggagtgaa 35637059  T
207 cgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattctta 280  Q
     ||| |||||   || ||||||| |||||||||||||||||| || |||| || |||||||| |||||||||||    
35637058 tgtattaacaagttctttaataatattcaaactcccatcatatagattatggataaagttaagtataattctta 35636985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 34337798 - 34337589
Alignment:
36 tttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattcagtttactcactacatag 135  Q
    ||||||||||||||||||||| ||| ||||||||||| | ||||| | |  ||||| || | | ||  | |||| ||||| || || ||||| |||||||    
34337798 tttggttccttgtggcagcatgtcaggtcttggattgacatttcaggtgctgaccctcaaaatattcatgatcactttatccaattaactcattacatag 34337699  T
136 gtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattca 235  Q
    || | |||| |||||    ||| |||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||| ||  ||| |||||| ||    
34337698 gtcactcgaggactcacaaatcatttcttcagcttgtttggcttctgtgcatttggctagtttggactgaacgtaataacatgctatttagtaacatcca 34337599  T
236 aactcccatc 245  Q
    ||||||||||    
34337598 aactcccatc 34337589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 330
Target Start/End: Complemental strand, 18893337 - 18893113
Alignment:
106 atcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatga 205  Q
    ||||||| || ||||||||||||||  |||||| ||||||| |  | |||||||||||||| ||  |||||||||| ||||| |||||||||||||||||    
18893337 atcatttcatacagtttactcactatttaggtggttcgaaggcgaggcgatcttttcttcaactattatggcttctttgcgtatggctagtttggaatga 18893238  T
206 acgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtc 305  Q
     |||||||| |   |  | |||||    ||||||||||| ||||  ||||| || ||||| ||| |||||||||||||||| ||||| || || || | |    
18893237 gcgtaataataggttgttcaataatgcccaaactcccattatagctcttatggaaaaagtgaaacataattcttattggtggctgaaggcaaataacgcc 18893138  T
306 acttttttgtatggttctcagagat 330  Q
     ||||| | ||||||||||||||||    
18893137 tcttttgtatatggttctcagagat 18893113  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 24177306 - 24177191
Alignment:
258 gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgg 355  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||  || | |||| | ||||| |||||||    
24177306 gacaaagttaaacttaattcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttgg 24177207  T
356 gtatcggctgaccttt 371  Q
     ||||| |||||||||    
24177206 atatcgactgaccttt 24177191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 330
Target Start/End: Original strand, 34317625 - 34317796
Alignment:
159 tttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatag 258  Q
    |||||||||||| | |||||| | ||| ||||||||||||||| || |||||| ||||  ||  |||||||||| |||||||||||| || |  |  | |    
34317625 tttcttcagcttgtctggcttttttgcatttggctagtttggactggacgtaacaacaagctatttaataacatccaaactcccatcttacaaatcttgg 34317724  T
259 acaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 330  Q
    | || |||||| |||||||||||||||   |||||||||||||   ||||||||| |  |||||||||||||    
34317725 aaaaggttaaacataattcttattggttgttgaaagctaacaacaccacttttttattcggttctcagagat 34317796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 35636897 - 35636792
Alignment:
261 aaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgggta 358  Q
    |||||||| ||||||||||| | |||  |||| || || ||||  ||||| |||||||||| ||| ||||  || || ||||| ||||||||||||||||    
35636897 aaagttaagtataattcttactagtggttgaaggccaataatgctactttgttgtatggttgtcaaagatgatggtcagacccattgttatgcttgggta 35636798  T
359 tcggct 364  Q
    ||||||    
35636797 tcggct 35636792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 34874787 - 34874844
Alignment:
159 tttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataaca 216  Q
    |||||||||||||| |||||  ||||||||||| |  | |||||||||||||||||||    
34874787 tttcttcagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataaca 34874844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 27679680 - 27679759
Alignment:
294 gctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgggtatcggctgaccttt 371  Q
    ||||| |||||||||||| |||| |||||||||| ||  || ||||||||| || |||| |||||||||| | |||||||    
27679680 gctaataatgtcacttttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtatcgaccgaccttt 27679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 311
Target Start/End: Complemental strand, 33281001 - 33280729
Alignment:
39 ggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattcagtttactcactacataggtg 138  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| | |  |||||  | | | ||  | |||| ||||| || ||||| |||||||||||      
33281001 ggttccttgtggcagcatgtcaggtcttggattgacgtttcaggtgctgacccttaaaatattcatgatcactttatccaatttacgcactacataggca 33280902  T
139 attcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaac 238  Q
    ||||||  |||||  | || ||||||||| |||| |  ||| ||||| ||||||||||||||| |||||||||||||| |||| ||||||||||||||||    
33280901 attcgagaactcgcagttcatttcttcagattatttaacttatgtgcatttggctagtttggactgaacgtaataacagactctttaataacattcaaac 33280802  T
239 tcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 311  Q
    ||||||  || ||||| | || || |||||| ||||||||| || |||  ||||||||||||| | |||||||    
33280801 tcccattgtacagcttctggaaaaggttaaagataattcttttttgtggttgaaagctaacaaagccactttt 33280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 7300610 - 7300384
Alignment:
18 tttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattc 117  Q
    ||||||||||| |||| ||| ||||| ||||||||| |||||| |||||||||| | || ||| | || ||  | |||| | ||||| | ||||| ||||    
7300610 tttcttcattgtgacagtttcggttctttgtggcagtatatcatgtcttggattagtgtgtcaggtgttgatactcataatatttgtgagcatttcattc 7300511  T
118 agtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacat 217  Q
    ||||||||||||| |  ||| ||| || ||| || |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | || |||      
7300510 agtttactcactatactggtcatttgatgacgcgtcgatcttttcttcagcttatttggctactttgtgtctggatggtttggaatgaatgcaacaacgg 7300411  T
218 actcattaataacattcaaactcccat 244  Q
    |||  |||||||||| ||||| |||||    
7300410 actatttaataacatccaaacccccat 7300384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18634915 - 18634836
Alignment:
1 aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttca 80  Q
    ||||||| |||||| ||||||||||||| |||| ||| || || ||||||||| |||| | ||| |||||||||||||||    
18634915 aatcaacgtctcatttgtttcttcattgtgacagtttcggctctttgtggcagtatattaggtcgtggattggcgtttca 18634836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 32624299 - 32624232
Alignment:
6 acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattgg 73  Q
    ||||||||| | ||| ||||||||| || ||||||||| |||||||| | ||||| ||||||||||||    
32624299 acatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattgg 32624232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 18634660 - 18634559
Alignment:
256 tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatgctt 353  Q
    |||| |||||||||| | |||  | ||||||||| |||||||| |||  ||| ||| ||||||| |||||||||| ||  ||||||||||||||||| ||    
18634660 tagaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccctttgttatgttt 18634561  T
354 gg 355  Q
    ||    
18634560 gg 18634559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 7300293 - 7300256
Alignment:
334 tcggaccctttgttatgcttgggtatcggctgaccttt 371  Q
    ||||||||||||||||| |||||||||| |||||||||    
7300293 tcggaccctttgttatgtttgggtatcgactgaccttt 7300256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 144219 - 144283
Alignment:
6 acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggat 70  Q
    ||||||||||| ||| ||||||||  || ||||||||| |||||||| | ||||| |||||||||    
144219 acatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggat 144283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 42240078 - 42240376
Alignment:
1 aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtct 100  Q
    ||||| || ||||| ||||| | ||||||||||| |||||||| || ||||||||||| | | |||||||||  |||||| |||| || ||  ||| | |    
42240078 aatcagcacctcatatgtttatacattgcgacatatttggttcattatggcagcatataaggacttggattgctgtttcaggagttgatccttataatat 42240177  T
101 ttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttgg 200  Q
    | ||   |||||||||||||||||| |||   || |    ||  ||||| | || |||||| | || ||||| |||||| || |||||||| ||||||||    
42240178 tcgtgcccattttattcagtttactaactctgtatgaacgtcacagacttgccgttcttttatgcaacttatttggcttttgggcgtttggatagtttgg 42240277  T
201 aatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaac 299  Q
    ||||||||||| |||||  || | |||||||| |||||| |||| ||||| ||  ||||||| |||||||||||||||| |||||  |||| |||||||    
42240278 aatgaacgtaacaacatgatcttcaataacatccaaacttccatgatagatctactagacaaggttaaatataattctttttggttgctgatagctaac 42240376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 7671201 - 7671066
Alignment:
195 gtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaag 294  Q
    ||||||||||| ||||| ||||| ||| |||| || ||| |||| || |||| |||| ||||||| || |||||||||||||||||||||||  ||||||    
7671201 gtttggaatgagcgtaacaacatgctctttaacaatattgaaaccccaatcaaagagattatagaaaaggttaaatataattcttattggtggttgaaag 7671102  T
295 ctaacaatgtcacttttttgtatggttctcagagat 330  Q
    | ||||| | ||||||| ||||||||| | ||||||    
7671101 caaacaaagccacttttgtgtatggttttaagagat 7671066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 32095768 - 32095830
Alignment:
249 gagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 311  Q
    |||||||| || |||||||||| ||||||||||||||  || ||||||||| | |||||||||    
32095768 gagcttattgaaaaagttaaatttaattcttattggtagctaaaagctaacgaagtcactttt 32095830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 21548229 - 21548472
Alignment:
1 aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtct 100  Q
    ||||||||  |||||| || || ||||||||  | ||||||||||| ||||||||| ||| ||||||||||| | ||||| | |  ||||| || | | |    
21548229 aatcaacaggtcatcttttcctacattgcgaattgtttggttccttatggcagcatgtcaggtcttggattgacatttcaggtgctgaccctcaaaatat 21548328  T
101 ttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttgg 200  Q
    |  | |||| ||||| || |||||||| ||||  ||| | |||| |||| |  |||| | ||||||||||   |||| | ||||| ||||||||||||||    
21548329 tcatgatcactttatccaatttactcattacagtggtcactcgaggacttgcagatcatatcttcagcttgcctggcatttgtgcatttggctagtttgg 21548428  T
201 aatgaacgtaataacatactcattaataacattcaaactcccatc 245  Q
    | |||||||||||||| |||  ||||||| || ||||||||||||    
21548429 actgaacgtaataacaaactatttaataa-atccaaactcccatc 21548472  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 371
Target Start/End: Original strand, 43171392 - 43171559
Alignment:
205 aacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgt 304  Q
    ||||||| |||| |||| |||| || ||| ||||||| |||| | || |||| || || |||||||||||||  ||||||||  |||| || ||||| |     
43171392 aacgtaacaacagactctttaacaatattgaaactccaatcagaaagattatggaaaaggttaaatataatttctattggtggttgaa-gcaaacaaagc 43171490  T
305 cacttttttgtatggttctcagagattgt--tcggaccctttgttatgcttgggtatcggctgaccttt 371  Q
    ||||||| ||||||| |||||||||| ||  ||||| || ||  | |||||||||||||||||||||||    
43171491 cacttttgtgtatggctctcagagatggtggtcggatccgttactttgcttgggtatcggctgaccttt 43171559  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 4964302 - 4964241
Alignment:
12 catctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattgg 73  Q
    ||||||||||||||||||||  |||||||||| || |||||||||||||  || ||||||||    
4964302 catctgtttcttcattgcgaggtttttggttctttatggcagcatatcagatcatggattgg 4964241  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 14307182 - 14307118
Alignment:
12 catctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgt 76  Q
    |||||||||||||||| |||| |||||||||| || ||||| || |||| ||| |||||||||||    
14307182 catctgtttcttcattacgacgtttttggttcgttatggcaacacatcaggtcatggattggcgt 14307118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 30793596 - 30793640
Alignment:
248 agagcttatagacaaagttaaatataattcttattggtgactgaa 292  Q
    |||||||||||| |||||||||| | ||||||||||||| |||||    
30793596 agagcttatagataaagttaaattttattcttattggtggctgaa 30793640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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