View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_high_17 (Length: 382)
Name: NF11391_high_17
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_high_17 |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 46734350 - 46734720
Alignment:
| Q |
1 |
aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
46734350 |
aatcagcatctcatctgtttcttcattgcgacatttttggttccttgtgacagcatatcaagtcttggattggcgtttcaagagtcaaccctcatagtct |
46734449 |
T |
 |
| Q |
101 |
ttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttgg |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
46734450 |
tcgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttctttagcttatatggcttctatgcgtttggctagtttgg |
46734549 |
T |
 |
| Q |
201 |
aatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46734550 |
aatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaatttaaatataattcttattggtggctgaaagctaaca |
46734649 |
T |
 |
| Q |
301 |
atgtcacttttttgtatggttctcagagattgttcggaccctttgttatgcttgggtatcggctgaccttt |
371 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46734650 |
atgtcacttttgtgtatggttttcagagattgttcggaccctttgttatgcttgaatatcggctgaccttt |
46734720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 368
Target Start/End: Complemental strand, 34105131 - 34104919
Alignment:
| Q |
158 |
ttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttata |
257 |
Q |
| |
|
||||||||| ||| ||||||||| ||| |||| ||||||||||||||||||||||||| || | ||||| | ||||||||||| |||| ||||| |
|
|
| T |
34105131 |
ttttcttcaacttccatggcttctttgcatttgactagtttggaatgaacgtaataacaagttcttcaataatgtccaaactcccattatagctcttatg |
34105032 |
T |
 |
| Q |
258 |
gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgg |
355 |
Q |
| |
|
|| ||||| || |||||| | ||||||| |||| || || |||| | |||| | |||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
34105031 |
gaaaaagtgaagcataattttgattggtggttgaaggcgaataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgg |
34104932 |
T |
 |
| Q |
356 |
gtatcggctgacc |
368 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
34104931 |
gtatcgactgacc |
34104919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 330
Target Start/End: Complemental strand, 55261745 - 55261611
Alignment:
| Q |
196 |
tttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagc |
295 |
Q |
| |
|
||||||||| ||||||||||| || |||||||| | |||||| | || | ||||||||| || |||||||||| ||||||||| ||| |||||||| |
|
|
| T |
55261745 |
tttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaattccattcttattcgtggctgaaagc |
55261646 |
T |
 |
| Q |
296 |
taacaatgtcacttttttgtatggttctcagagat |
330 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||| |
|
|
| T |
55261645 |
taacaaagccacttttgtgtatggttctcagagat |
55261611 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 8081806 - 8081726
Alignment:
| Q |
231 |
attcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt |
311 |
Q |
| |
|
|||||| || |||| ||||| ||| |||| || ||||||||||| | || |||||| ||||||||||||||||||| |||| |
|
|
| T |
8081806 |
attcaagctaccatgatagaacttttagaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaatttt |
8081726 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 21393758 - 21393856
Alignment:
| Q |
172 |
tatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaat |
270 |
Q |
| |
|
||||||| || || ||||||||||| ||||||||||||||||| | ||| ||||||| ||| |||||||| | ||||||||| || || ||||||| |
|
|
| T |
21393758 |
tatggctcctttgtgtttggctagtgtggaatgaacgtaataatagactatttaataattctcacactcccattacagagcttatggataaggttaaat |
21393856 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 56337951 - 56338017
Alignment:
| Q |
264 |
gttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat |
330 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||| ||||||| | ||||||||||| |||| |
|
|
| T |
56337951 |
gttaaatatacttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagat |
56338017 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 27393842 - 27394194
Alignment:
| Q |
16 |
tgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttat |
115 |
Q |
| |
|
||||||| ||| |||| || ||||| || || ||||||||| || ||||||| |||| |||||| |||| || || |||||| || | |||||||||| |
|
|
| T |
27393842 |
tgtttctgcatcgcgatatatttggatcattatggcagcatgccaggtcttggtttggtgtttcaggagtagaaccacatagtattcgagatcattttat |
27393941 |
T |
 |
| Q |
116 |
tcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataac |
215 |
Q |
| |
|
||| |||||||| || |||||| || |||| | | | ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
27393942 |
tcactttactcattatctaggtggtttgaaggcgaggtgctcttttcttcaacttttatggcttctttgcatttggttagtttggaatgaacgttataac |
27394041 |
T |
 |
| Q |
216 |
atactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgt |
315 |
Q |
| |
|
|| | | ||||| || ||||||||||||||||| |||| || |||||||| |||| |||||||||||| |||| ||||| |||||||||||| | | |
|
|
| T |
27394042 |
atgttattaaataatatccaaactcccatcatagatctta-ggaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtat |
27394140 |
T |
 |
| Q |
316 |
atggttctcagagat--tgttcggaccctttgttatgcttgggtatcggctgac |
367 |
Q |
| |
|
|||| |||||| ||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
27394141 |
atggctctcagtgatggtggtcggacccattgttatgcttgggtatcggctgac |
27394194 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 48380510 - 48380418
Alignment:
| Q |
274 |
attcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgggtatcggct |
364 |
Q |
| |
|
||||||||||||| || ||||||||||| | |||| || ||||||||||| |||||| || |||||| |||||||||| ||||||||||||| |
|
|
| T |
48380510 |
attcttattggtggctaaaagctaacaacgccactcttgtgtatggttcttagagatggtggtcggactctttgttatgtttgggtatcggct |
48380418 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 33576076 - 33576012
Alignment:
| Q |
153 |
cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacat |
217 |
Q |
| |
|
||||| ||||| |||||| |||||||| |||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
33576076 |
cgatcgtttctacagcttttatggcttttgtgtgtttggcaggtttggaatgaacataataacat |
33576012 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 39474225 - 39474580
Alignment:
| Q |
16 |
tgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttat |
115 |
Q |
| |
|
||||||||||||| |||||||| || || ||||| ||||| ||| || |||||||| |||||| ||| || || |||||| || | ||||||| || |
|
|
| T |
39474225 |
tgtttcttcattgtgacattttcggatctttgtgacagcaagtcaggttttggattgatgtttcaggagcagaaccacatagtattcgggatcatttcat |
39474324 |
T |
 |
| Q |
116 |
tcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataac |
215 |
Q |
| |
|
||||||||||| || |||||| ||||||| | |||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39474325 |
acagtttactcattatctaggtggttcgaaggcgagacgttcttttcttcaacttttatggcttctttgcgtttggctagtttggaatgaacgtaataac |
39474424 |
T |
 |
| Q |
216 |
atactcattaataacattcaaactcccatcatagagcttatag-acaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttg |
314 |
Q |
| |
|
| || | ||||| | ||||||||||| |||| ||||| | | ||||| || |||||||||||||||| |||| || || || | ||||| | |
|
|
| T |
39474425 |
aagttcttcaataatgtccaaactcccattatagctcttatggaaaaaagtgaagcataattcttattggtggttgaaggcgaataacacctcttttata |
39474524 |
T |
 |
| Q |
315 |
tatggttctcagagat--tgttcggaccctttgttatgcttgggtatcggctgacc |
368 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| | |||||| |
|
|
| T |
39474525 |
tatggttctcagagatggtggtcggaccctttgttatgcttgggtattgactgacc |
39474580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 368
Target Start/End: Original strand, 33821864 - 33822081
Alignment:
| Q |
153 |
cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagc |
252 |
Q |
| |
|
||||| ||||| |||||| |||||||| |||| ||||||| ||||||||||| |||||||||| | |||||||||| ||| ||||| || ||| |
|
|
| T |
33821864 |
cgatcgtttctacagcttttatggcttttgtgagtttggcaggtttggaatgagcgtaataacaggatttttaataacatccaagtccccattattcagc |
33821963 |
T |
 |
| Q |
253 |
ttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatg |
350 |
Q |
| |
|
|| |||| | ||||||||| | || | |||||| ||||| ||||| ||||||||||| |||| |||||||| |||| || |||||||||||| | || |
|
|
| T |
33821964 |
ttttagatagagttaaataccactcattttggtggctgaaggctaataatgtcactttcatgtacggttctcatagatggtagtcggaccctttgatttg |
33822063 |
T |
 |
| Q |
351 |
cttgggtatcggctgacc |
368 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
33822064 |
tttgggtatcgactgacc |
33822081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 368
Target Start/End: Complemental strand, 23898078 - 23897861
Alignment:
| Q |
153 |
cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagc |
252 |
Q |
| |
|
||||| ||||| | |||| |||||||| |||| ||||||| |||||||||||| ||||||||||| | |||||||||| ||||| ||||| || | | |
|
|
| T |
23898078 |
cgatcgtttctacggcttttatggcttttgtgtgtttggcaagtttggaatgagcgtaataacatgatttttaataacatccaaacccccattatgcaac |
23897979 |
T |
 |
| Q |
253 |
ttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatg |
350 |
Q |
| |
|
|| |||| | ||||||||| | || | ||| || ||||| ||| ||||||||||| |||| |||||| | |||| || |||||||||||| | || |
|
|
| T |
23897978 |
ttttagatagagttaaataccactcattttgatggctgaagattaataatgtcactttcatgtacggttcttatagatggtagtcggaccctttgatttg |
23897879 |
T |
 |
| Q |
351 |
cttgggtatcggctgacc |
368 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
23897878 |
tttaggtatcggctgacc |
23897861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 330
Target Start/End: Original strand, 8753732 - 8753907
Alignment:
| Q |
155 |
atcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagctt |
254 |
Q |
| |
|
|||||||||||||||||| ||||| || | || ||| | || |||||||| || ||||||| ||| |||||||||| ||||| || || || || || |
|
|
| T |
8753732 |
atcttttcttcagcttatttggctgttgggtgtctggttggtgtggaatgagcgaaataacaagctctttaataacatccaaaccccaattattcagatt |
8753831 |
T |
 |
| Q |
255 |
atagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat |
330 |
Q |
| |
|
||||| ||||||||| | |||| |||||||| || |||||||| |||| || ||| |||| |||| |||||||| |
|
|
| T |
8753832 |
ttagacgaagttaaatttcattcgtattggtggctcaaagctaaaaatgccatgtttgtgtacggttttcagagat |
8753907 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 133 - 368
Target Start/End: Complemental strand, 29824491 - 29824254
Alignment:
| Q |
133 |
taggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcatt-aataaca |
231 |
Q |
| |
|
|||||| ||||||| | |||| ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||| |||||||| | | ||| ||||| | |
|
|
| T |
29824491 |
taggtggttcgaaggcgagacgctcttttcttcaacttttatggcttctttgcatttggttagtttggaatgaacataataaca-agttattcaataata |
29824393 |
T |
 |
| Q |
232 |
ttcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat- |
330 |
Q |
| |
|
| ||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||| |||| |||| |||||||||||| | ||||| ||||||| || |
|
|
| T |
29824392 |
tccaaactcccatcatagatcttatggaaaaaattaagtataattcttaatggtgattgaagactaataatgtcacttttgtatatggctctcagaaatg |
29824293 |
T |
 |
| Q |
331 |
-tgttcggaccctttgttatgcttgggtatcggctgacc |
368 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
29824292 |
gtggtcggtcccattgttatgcttgggtatcggctgacc |
29824254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20347854 - 20347795
Alignment:
| Q |
1 |
aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatca |
60 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
20347854 |
aatcagcatctcatttgtttcttcattgcgacatgtttgattctttgtggcagcatatca |
20347795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 17749158 - 17749280
Alignment:
| Q |
156 |
tcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagctta |
255 |
Q |
| |
|
|||||| | |||||| | ||||||||| | || ||| ||||||||||||||||||| ||||| | |||| || | ||||||| || | ||||| ||| |
|
|
| T |
17749158 |
tcttttatgcagcttttttggcttctgggtgtgtggatagtttggaatgaacgtaacaacatggtatttaagaatactcaaactaccgtgatagatcttt |
17749257 |
T |
 |
| Q |
256 |
tagacaaagttaaatataattct |
278 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
17749258 |
tagaaaaagttaaatataattct |
17749280 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 34117537 - 34117643
Alignment:
| Q |
267 |
aaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatgcttgggtatcggct |
364 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||| || ||| | ||||| ||||||| ||||| |||||||| | ||||| || ||||||| || |
|
|
| T |
34117537 |
aaatataattctttttggtggctgaaagccaacaatgccaactttgtttatggctctcagatattgtggtcggaccccctattatgtttaggtatcgact |
34117636 |
T |
 |
| Q |
365 |
gaccttt |
371 |
Q |
| |
|
||||||| |
|
|
| T |
34117637 |
gaccttt |
34117643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 1364767 - 1364693
Alignment:
| Q |
256 |
tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat |
330 |
Q |
| |
|
||||||||||||||| | |||| |||||||| || |||||||| ||||||| ||| |||||| |||||| |||| |
|
|
| T |
1364767 |
tagacaaagttaaatttcattcgtattggtggcttaaagctaaaaatgtcatgtttctgtatgattctcacagat |
1364693 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 303
Target Start/End: Complemental strand, 29520699 - 29520589
Alignment:
| Q |
193 |
tagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaa |
292 |
Q |
| |
|
|||||||||||||||| || |||| | | | || || ||||||||| |||| ||||| ||| |||| || ||||||||||| || | |||||| ||||| |
|
|
| T |
29520699 |
tagtttggaatgaacgaaacaacaaaatattcaagaatattcaaactaccatgatagaacttttagaaaaggttaaatataactcattttggtggctgaa |
29520600 |
T |
 |
| Q |
293 |
agctaacaatg |
303 |
Q |
| |
|
||| ||||||| |
|
|
| T |
29520599 |
agcaaacaatg |
29520589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 29824594 - 29824521
Alignment:
| Q |
7 |
catctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttca |
80 |
Q |
| |
|
|||||||| ||||| | ||||| || |||||||| ||||||||||||||| ||| |||||| |||| |||||| |
|
|
| T |
29824594 |
catctcatttgtttttgcattgtgatatttttggatccttgtggcagcatgtcagatcttggtttggtgtttca |
29824521 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 14687203 - 14687267
Alignment:
| Q |
6 |
acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggat |
70 |
Q |
| |
|
||||||||||| ||| |||||||| || ||||||||| |||||||| | ||||| ||||||||| |
|
|
| T |
14687203 |
acatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggat |
14687267 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 35637258 - 35636985
Alignment:
| Q |
7 |
catctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtca |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||| | ||||||| ||| |||||||||||| |||| | || | || || || ||||| ||| | |
|
|
| T |
35637258 |
catctcatttgtttcttcattgcgacatgtttggctccttatagcagcatgtcaggtcttggattggtgttttaggactagatcctcagagtctctgtga |
35637159 |
T |
 |
| Q |
107 |
tcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaa |
206 |
Q |
| |
|
||||||||||||||| ||| | || |||||| ||||| ||| ||||||||||||||| ||| |||| | || || ||||| |||||||||| |||| |
|
|
| T |
35637158 |
tcattttattcagttcacttattatctaggtggttcgagagctcaacgatcttttcttcaccttttatgtttgctttgtgtttgactagtttggagtgaa |
35637059 |
T |
 |
| Q |
207 |
cgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattctta |
280 |
Q |
| |
|
||| ||||| || ||||||| |||||||||||||||||| || |||| || |||||||| ||||||||||| |
|
|
| T |
35637058 |
tgtattaacaagttctttaataatattcaaactcccatcatatagattatggataaagttaagtataattctta |
35636985 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 34337798 - 34337589
Alignment:
| Q |
36 |
tttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattcagtttactcactacatag |
135 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| | ||||| | | ||||| || | | || | |||| ||||| || || ||||| ||||||| |
|
|
| T |
34337798 |
tttggttccttgtggcagcatgtcaggtcttggattgacatttcaggtgctgaccctcaaaatattcatgatcactttatccaattaactcattacatag |
34337699 |
T |
 |
| Q |
136 |
gtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattca |
235 |
Q |
| |
|
|| | |||| ||||| ||| |||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||| || ||| |||||| || |
|
|
| T |
34337698 |
gtcactcgaggactcacaaatcatttcttcagcttgtttggcttctgtgcatttggctagtttggactgaacgtaataacatgctatttagtaacatcca |
34337599 |
T |
 |
| Q |
236 |
aactcccatc |
245 |
Q |
| |
|
|||||||||| |
|
|
| T |
34337598 |
aactcccatc |
34337589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 330
Target Start/End: Complemental strand, 18893337 - 18893113
Alignment:
| Q |
106 |
atcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatga |
205 |
Q |
| |
|
||||||| || |||||||||||||| |||||| ||||||| | | |||||||||||||| || |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
18893337 |
atcatttcatacagtttactcactatttaggtggttcgaaggcgaggcgatcttttcttcaactattatggcttctttgcgtatggctagtttggaatga |
18893238 |
T |
 |
| Q |
206 |
acgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtc |
305 |
Q |
| |
|
|||||||| | | | ||||| ||||||||||| |||| ||||| || ||||| ||| |||||||||||||||| ||||| || || || | | |
|
|
| T |
18893237 |
gcgtaataataggttgttcaataatgcccaaactcccattatagctcttatggaaaaagtgaaacataattcttattggtggctgaaggcaaataacgcc |
18893138 |
T |
 |
| Q |
306 |
acttttttgtatggttctcagagat |
330 |
Q |
| |
|
||||| | |||||||||||||||| |
|
|
| T |
18893137 |
tcttttgtatatggttctcagagat |
18893113 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 24177306 - 24177191
Alignment:
| Q |
258 |
gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgg |
355 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||| | ||||||| |||||||||||||||||| || | |||| | ||||| ||||||| |
|
|
| T |
24177306 |
gacaaagttaaacttaattcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttgg |
24177207 |
T |
 |
| Q |
356 |
gtatcggctgaccttt |
371 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
24177206 |
atatcgactgaccttt |
24177191 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 330
Target Start/End: Original strand, 34317625 - 34317796
Alignment:
| Q |
159 |
tttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatag |
258 |
Q |
| |
|
|||||||||||| | |||||| | ||| ||||||||||||||| || |||||| |||| || |||||||||| |||||||||||| || | | | | |
|
|
| T |
34317625 |
tttcttcagcttgtctggcttttttgcatttggctagtttggactggacgtaacaacaagctatttaataacatccaaactcccatcttacaaatcttgg |
34317724 |
T |
 |
| Q |
259 |
acaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat |
330 |
Q |
| |
|
| || |||||| ||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
34317725 |
aaaaggttaaacataattcttattggttgttgaaagctaacaacaccacttttttattcggttctcagagat |
34317796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 35636897 - 35636792
Alignment:
| Q |
261 |
aaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgggta |
358 |
Q |
| |
|
|||||||| ||||||||||| | ||| |||| || || |||| ||||| |||||||||| ||| |||| || || ||||| |||||||||||||||| |
|
|
| T |
35636897 |
aaagttaagtataattcttactagtggttgaaggccaataatgctactttgttgtatggttgtcaaagatgatggtcagacccattgttatgcttgggta |
35636798 |
T |
 |
| Q |
359 |
tcggct |
364 |
Q |
| |
|
|||||| |
|
|
| T |
35636797 |
tcggct |
35636792 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 34874787 - 34874844
Alignment:
| Q |
159 |
tttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataaca |
216 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| | | ||||||||||||||||||| |
|
|
| T |
34874787 |
tttcttcagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataaca |
34874844 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 27679680 - 27679759
Alignment:
| Q |
294 |
gctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgggtatcggctgaccttt |
371 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||| || || ||||||||| || |||| |||||||||| | ||||||| |
|
|
| T |
27679680 |
gctaataatgtcacttttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtatcgaccgaccttt |
27679759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 311
Target Start/End: Complemental strand, 33281001 - 33280729
Alignment:
| Q |
39 |
ggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattcagtttactcactacataggtg |
138 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||| | | ||||| | | | || | |||| ||||| || ||||| ||||||||||| |
|
|
| T |
33281001 |
ggttccttgtggcagcatgtcaggtcttggattgacgtttcaggtgctgacccttaaaatattcatgatcactttatccaatttacgcactacataggca |
33280902 |
T |
 |
| Q |
139 |
attcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaac |
238 |
Q |
| |
|
|||||| ||||| | || ||||||||| |||| | ||| ||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
33280901 |
attcgagaactcgcagttcatttcttcagattatttaacttatgtgcatttggctagtttggactgaacgtaataacagactctttaataacattcaaac |
33280802 |
T |
 |
| Q |
239 |
tcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt |
311 |
Q |
| |
|
|||||| || ||||| | || || |||||| ||||||||| || ||| ||||||||||||| | ||||||| |
|
|
| T |
33280801 |
tcccattgtacagcttctggaaaaggttaaagataattcttttttgtggttgaaagctaacaaagccactttt |
33280729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 7300610 - 7300384
Alignment:
| Q |
18 |
tttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattc |
117 |
Q |
| |
|
||||||||||| |||| ||| ||||| ||||||||| |||||| |||||||||| | || ||| | || || | |||| | ||||| | ||||| |||| |
|
|
| T |
7300610 |
tttcttcattgtgacagtttcggttctttgtggcagtatatcatgtcttggattagtgtgtcaggtgttgatactcataatatttgtgagcatttcattc |
7300511 |
T |
 |
| Q |
118 |
agtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacat |
217 |
Q |
| |
|
||||||||||||| | ||| ||| || ||| || |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | || ||| |
|
|
| T |
7300510 |
agtttactcactatactggtcatttgatgacgcgtcgatcttttcttcagcttatttggctactttgtgtctggatggtttggaatgaatgcaacaacgg |
7300411 |
T |
 |
| Q |
218 |
actcattaataacattcaaactcccat |
244 |
Q |
| |
|
||| |||||||||| ||||| ||||| |
|
|
| T |
7300410 |
actatttaataacatccaaacccccat |
7300384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18634915 - 18634836
Alignment:
| Q |
1 |
aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttca |
80 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||| ||| || || ||||||||| |||| | ||| ||||||||||||||| |
|
|
| T |
18634915 |
aatcaacgtctcatttgtttcttcattgtgacagtttcggctctttgtggcagtatattaggtcgtggattggcgtttca |
18634836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 32624299 - 32624232
Alignment:
| Q |
6 |
acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattgg |
73 |
Q |
| |
|
||||||||| | ||| ||||||||| || ||||||||| |||||||| | ||||| |||||||||||| |
|
|
| T |
32624299 |
acatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattgg |
32624232 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 18634660 - 18634559
Alignment:
| Q |
256 |
tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatgctt |
353 |
Q |
| |
|
|||| |||||||||| | ||| | ||||||||| |||||||| ||| ||| ||| ||||||| |||||||||| || ||||||||||||||||| || |
|
|
| T |
18634660 |
tagaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccctttgttatgttt |
18634561 |
T |
 |
| Q |
354 |
gg |
355 |
Q |
| |
|
|| |
|
|
| T |
18634560 |
gg |
18634559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 7300293 - 7300256
Alignment:
| Q |
334 |
tcggaccctttgttatgcttgggtatcggctgaccttt |
371 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
7300293 |
tcggaccctttgttatgtttgggtatcgactgaccttt |
7300256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 144219 - 144283
Alignment:
| Q |
6 |
acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggat |
70 |
Q |
| |
|
||||||||||| ||| |||||||| || ||||||||| |||||||| | ||||| ||||||||| |
|
|
| T |
144219 |
acatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggat |
144283 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 42240078 - 42240376
Alignment:
| Q |
1 |
aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtct |
100 |
Q |
| |
|
||||| || ||||| ||||| | ||||||||||| |||||||| || ||||||||||| | | ||||||||| |||||| |||| || || ||| | | |
|
|
| T |
42240078 |
aatcagcacctcatatgtttatacattgcgacatatttggttcattatggcagcatataaggacttggattgctgtttcaggagttgatccttataatat |
42240177 |
T |
 |
| Q |
101 |
ttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttgg |
200 |
Q |
| |
|
| || |||||||||||||||||| ||| || | || ||||| | || |||||| | || ||||| |||||| || |||||||| |||||||| |
|
|
| T |
42240178 |
tcgtgcccattttattcagtttactaactctgtatgaacgtcacagacttgccgttcttttatgcaacttatttggcttttgggcgtttggatagtttgg |
42240277 |
T |
 |
| Q |
201 |
aatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaac |
299 |
Q |
| |
|
||||||||||| ||||| || | |||||||| |||||| |||| ||||| || ||||||| |||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
42240278 |
aatgaacgtaacaacatgatcttcaataacatccaaacttccatgatagatctactagacaaggttaaatataattctttttggttgctgatagctaac |
42240376 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 7671201 - 7671066
Alignment:
| Q |
195 |
gtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaag |
294 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| || ||| |||| || |||| |||| ||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
7671201 |
gtttggaatgagcgtaacaacatgctctttaacaatattgaaaccccaatcaaagagattatagaaaaggttaaatataattcttattggtggttgaaag |
7671102 |
T |
 |
| Q |
295 |
ctaacaatgtcacttttttgtatggttctcagagat |
330 |
Q |
| |
|
| ||||| | ||||||| ||||||||| | |||||| |
|
|
| T |
7671101 |
caaacaaagccacttttgtgtatggttttaagagat |
7671066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 32095768 - 32095830
Alignment:
| Q |
249 |
gagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt |
311 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||||| || ||||||||| | ||||||||| |
|
|
| T |
32095768 |
gagcttattgaaaaagttaaatttaattcttattggtagctaaaagctaacgaagtcactttt |
32095830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 21548229 - 21548472
Alignment:
| Q |
1 |
aatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtct |
100 |
Q |
| |
|
|||||||| |||||| || || |||||||| | ||||||||||| ||||||||| ||| ||||||||||| | ||||| | | ||||| || | | | |
|
|
| T |
21548229 |
aatcaacaggtcatcttttcctacattgcgaattgtttggttccttatggcagcatgtcaggtcttggattgacatttcaggtgctgaccctcaaaatat |
21548328 |
T |
 |
| Q |
101 |
ttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttgg |
200 |
Q |
| |
|
| | |||| ||||| || |||||||| |||| ||| | |||| |||| | |||| | |||||||||| |||| | ||||| |||||||||||||| |
|
|
| T |
21548329 |
tcatgatcactttatccaatttactcattacagtggtcactcgaggacttgcagatcatatcttcagcttgcctggcatttgtgcatttggctagtttgg |
21548428 |
T |
 |
| Q |
201 |
aatgaacgtaataacatactcattaataacattcaaactcccatc |
245 |
Q |
| |
|
| |||||||||||||| ||| ||||||| || |||||||||||| |
|
|
| T |
21548429 |
actgaacgtaataacaaactatttaataa-atccaaactcccatc |
21548472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 371
Target Start/End: Original strand, 43171392 - 43171559
Alignment:
| Q |
205 |
aacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgt |
304 |
Q |
| |
|
||||||| |||| |||| |||| || ||| ||||||| |||| | || |||| || || ||||||||||||| |||||||| |||| || ||||| | |
|
|
| T |
43171392 |
aacgtaacaacagactctttaacaatattgaaactccaatcagaaagattatggaaaaggttaaatataatttctattggtggttgaa-gcaaacaaagc |
43171490 |
T |
 |
| Q |
305 |
cacttttttgtatggttctcagagattgt--tcggaccctttgttatgcttgggtatcggctgaccttt |
371 |
Q |
| |
|
||||||| ||||||| |||||||||| || ||||| || || | ||||||||||||||||||||||| |
|
|
| T |
43171491 |
cacttttgtgtatggctctcagagatggtggtcggatccgttactttgcttgggtatcggctgaccttt |
43171559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 4964302 - 4964241
Alignment:
| Q |
12 |
catctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattgg |
73 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||||||| || |||||||| |
|
|
| T |
4964302 |
catctgtttcttcattgcgaggtttttggttctttatggcagcatatcagatcatggattgg |
4964241 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 14307182 - 14307118
Alignment:
| Q |
12 |
catctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgt |
76 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| || ||||| || |||| ||| ||||||||||| |
|
|
| T |
14307182 |
catctgtttcttcattacgacgtttttggttcgttatggcaacacatcaggtcatggattggcgt |
14307118 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 30793596 - 30793640
Alignment:
| Q |
248 |
agagcttatagacaaagttaaatataattcttattggtgactgaa |
292 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||||||| ||||| |
|
|
| T |
30793596 |
agagcttatagataaagttaaattttattcttattggtggctgaa |
30793640 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University