View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11391_high_21 (Length: 363)

Name: NF11391_high_21
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11391_high_21
NF11391_high_21
[»] chr6 (1 HSPs)
chr6 (16-363)||(2719078-2719426)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 2719078 - 2719426
Alignment:
Q  16 atttgaacacaaaaattcccacactttaaactcttaactcaaatcagtttaactaaccaactcaaagatatgattatgtttatgatataaggatcaaaca 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2719078 atttgaacacaaaaattcccacactttaaactcttacctcaaatcagtttaactaaccaactcaaagatatgattatgtttatgatataaggatcaaaca 2719177  T
Q  116 cnnnnnnn-ggctcatctgcattgctttcacacacactacatgatccaacaaccctttgtaggtttgtattttgttttaatatgttgcaaatacaaatat 214  Q
    |        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2719178 caaaaaaaaggctcctctgcattgctttcacacacactacatgatccaacaaccctttgtaggtttgtattttgttttaatatgttgcaaatacaaatat 2719277  T
Q  215 aaagttcatgtgttcctattctaccaaactacctttcaatataaacttagacttaagttcatacaaatcatgttggtttaggtaagtggcaagggagttc 314  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2719278 aaagttcatgtgttcctattctaccaaactacctttcattataaacttagacttaagttcatacaaatcatgttggtttaggtaagtggcgagggagttc 2719377  T
Q  315 tatattttactttttctcagctatataatagtgttacccacgtaacttc 363  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2719378 tatattttactttttctcagctatataatagtgttacccgcgtaacttc 2719426  T

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