View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_high_24 (Length: 329)
Name: NF11391_high_24
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 38678226 - 38677915
Alignment:
| Q |
18 |
caatatgcgacggagtgacaactctagcttcgttaactatgaattttgaaggagtattttttgaactaagagcataaacaactgttaattagttgaagaa |
117 |
Q |
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| T |
38678226 |
caatatgcgacggagtgacaactctagcttcgttaactatgaattttgaaggagtattttttgaactaagagcataaacaactgttaattagttgaagaa |
38678127 |
T |
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| Q |
118 |
aattatataggatgcgatgctaaagtactacaatagcatactgcacagtgcacacatataaatcatatgattaaattaaactataaatctacttgttgct |
217 |
Q |
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| T |
38678126 |
aattatataggatgcgatgctaaagtactacaatagcatactgcacagtgcacacatataaatcatatgattaaattaaactataaatctacttgttgct |
38678027 |
T |
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| Q |
218 |
catattggcaactaataagttagggaaagaaatcatgaaaatgatccattgcaaatttacaacacacaacataagttccagctacgatatcttgatgcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
38678026 |
catattggcaactaataagttagggaaagaaatcatgaaaatgatccattacaaatttacaacacacaacataagatcaagctacgatatcttgatgcat |
38677927 |
T |
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| Q |
318 |
gtagcaacaatt |
329 |
Q |
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|||||||||||| |
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| T |
38677926 |
gtagcaacaatt |
38677915 |
T |
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