View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_high_28 (Length: 308)
Name: NF11391_high_28
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 45253990 - 45254270
Alignment:
| Q |
15 |
tcactttgaatacactgatgaatgaaatggtttttcctactgaaggaaatataattgattgcattcgttatggtgatcccaaatatgagacacttgatat |
114 |
Q |
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| T |
45253990 |
tcactttgaatacactgatgaatgaaatggtttttcctactgaaggaaatataattcattgcattcgttatggtgatcccaaatatgagacacttgatat |
45254089 |
T |
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| Q |
115 |
taggaaaggtttgcattgtgcaattgagcaacagaaggtggttaaacgagtatttggcacattgcgtttgtatattgttgcaaatgagaatctatggaag |
214 |
Q |
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| T |
45254090 |
taggaaaggtttgcattgtgcaattgagcaacagaaggtggttaaacgagtatttggcacattgcgtttgtatattgttgcaaatgagaatctatggaag |
45254189 |
T |
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| Q |
215 |
tgtgtcaaccctttacgtggtttgcccagtcatttcccagatgcaatctgggttaggattgagaaatttcttgcttcatct |
295 |
Q |
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| T |
45254190 |
tgtgtcaaccctttacgtggtttgcccagtcatttcccagatgcaatctgggttaggattgagaaatttcttgcttcatct |
45254270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 44261649 - 44261382
Alignment:
| Q |
15 |
tcactttgaatacactgatgaatgaaatggtttttcctactgaaggaaatataattgattgcattcgttatggtgatcccaaatatgagacacttgatat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44261649 |
tcactttgaatacactgatgaatgaaatggtttttcctatcgaaggaaatataattgattgcattcgttatggtgatcccaaatatgagacagttgatat |
44261550 |
T |
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| Q |
115 |
taggaaaggtttgcattgtgcaattgagcaacagaaggtggttaaacgagtatttggcacattgcgtttgtatattgttgcaaatgagaatctatggaag |
214 |
Q |
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| T |
44261549 |
taggaagggtttacattgtgcaattgagcaacagaaggtggttaaatgagtctttggcacattacgtt----------------tgagaatctatggaag |
44261466 |
T |
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| Q |
215 |
tgtgtcaa---ccctttacgtggtttgcccagtcatttcccagatgcaatctgggttaggattgagaaatttcttgcttcatct |
295 |
Q |
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||||| || ||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |
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| T |
44261465 |
tgtgtgaacccccccttacgtggtttgccaagtcatttcccagacgcaatctgggttaggatagagcaattccttgcttcatct |
44261382 |
T |
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