View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_high_33 (Length: 253)
Name: NF11391_high_33
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_high_33 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 30496677 - 30496440
Alignment:
| Q |
16 |
atgaaacttagataggttgatctgaattttatttgaattacatagactcactaggttctttatttgataatttaagttaattgtacttcaaattgacaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30496677 |
atgaaacttagataggttgatctgaattttatttgaattacaaagactcactagattctttatttgataatttaggttaattgtacttcaaattgacaca |
30496578 |
T |
|
| Q |
116 |
gatatgatacagatccagttattgcatatgttgttatcaaacagtaattgaatcctagtatgtgatgtattttgtgtcttatagcttatactacaagaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30496577 |
gatatgatacagatccagttattgcatatgttgttatcaaacagtaattgaatcctagtatgtgatgtattttgtgtcttatagcttatcctacaagaaa |
30496478 |
T |
|
| Q |
216 |
ccataacaactttgaattggtcctaccagtttattcac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30496477 |
ccataacaactttgaattggtcctaccagtttattcac |
30496440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University