View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_high_35 (Length: 246)
Name: NF11391_high_35
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 39079880 - 39079675
Alignment:
| Q |
12 |
ggggaggtttggaagacaaggctaccgaatagaattgatgcattgatgaacgaagtcaagttattgaatgatagtattgttctatatcttgttagttttg |
111 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
39079880 |
ggggaggtttgaaagacaaggctactgaatagaattgatgcattgatgaatgaagtcaagttattgaatgatagtattgttttatatctcgttagttttg |
39079781 |
T |
|
| Q |
112 |
attaaaattcttagttcaaaatagttatctcaaatatgtattatatagttgaactcttttatttgggtacttaatatggaatcaagagataattagatgc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39079780 |
attaaaattcttagtttaaaatagttatctcaaatatgtattctatagttgaactcttttatttgggtacttaatatggaatcaagagataattagatgc |
39079681 |
T |
|
| Q |
212 |
taatat |
217 |
Q |
| |
|
|||||| |
|
|
| T |
39079680 |
taatat |
39079675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 45726203 - 45726346
Alignment:
| Q |
15 |
gaggtttggaagacaaggctaccgaatagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttgttagttt |
109 |
Q |
| |
|
||||| |||||||||| | | | | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |||||| |
|
|
| T |
45726203 |
gaggtgtggaagacaaagttgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttt |
45726302 |
T |
|
| Q |
110 |
tgattaaaattcttagttcaaaatagttatctcaaatatgtatt |
153 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| | ||||||||||| |
|
|
| T |
45726303 |
tgaataaaattctttgttcacaatagttatatgaaatatgtatt |
45726346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 27657749 - 27657606
Alignment:
| Q |
15 |
gaggtttggaagacaaggctaccgaatagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttgttagttt |
109 |
Q |
| |
|
||||| |||||||||| | | | | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |||||| |
|
|
| T |
27657749 |
gaggtgtggaagacaaagttgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttt |
27657650 |
T |
|
| Q |
110 |
tgattaaaattcttagttcaaaatagttatctcaaatatgtatt |
153 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| | ||||||||||| |
|
|
| T |
27657649 |
tgaataaaattctttgttcacaatagttatatgaaatatgtatt |
27657606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 4884146 - 4884264
Alignment:
| Q |
40 |
atagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttgttagttttgattaaaattcttagttcaaaata |
134 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| ||||||||| |||||||||| ||||| |||| |
|
|
| T |
4884146 |
atagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttcataata |
4884245 |
T |
|
| Q |
135 |
gttatctcaaatatgtatt |
153 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
4884246 |
gttatatgaaatatgtatt |
4884264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 22114118 - 22113975
Alignment:
| Q |
15 |
gaggtttggaagacaaggctaccgaatagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttgttagttt |
109 |
Q |
| |
|
||||| |||||||||| | | | | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |||||| |
|
|
| T |
22114118 |
gaggtgtggaagacaaagttgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttt |
22114019 |
T |
|
| Q |
110 |
tgattaaaattcttagttcaaaatagttatctcaaatatgtatt |
153 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| | ||||||||||| |
|
|
| T |
22114018 |
tgaataaaattctttgttcacaatagttatatgaaatatgtatt |
22113975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 38719384 - 38719266
Alignment:
| Q |
40 |
atagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttgttagttttgattaaaattcttagttcaaaata |
134 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||| |||||||| | ||||||| ||||||||| |||||||||| ||||| |||| |
|
|
| T |
38719384 |
atagaattgatgcattgatgaatgaagtcaagttattgaagtatatgattgtattgttgtgtatcttggtagttttgaataaaattctttgttcacaata |
38719285 |
T |
|
| Q |
135 |
gttatctcaaatatgtatt |
153 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
38719284 |
gttatatgaaatatgtatt |
38719266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 27973074 - 27973141
Alignment:
| Q |
40 |
atagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttg |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
27973074 |
atagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttg |
27973141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 28030343 - 28030410
Alignment:
| Q |
40 |
atagaattgatgcattgatgaacgaagtcaagttattgaa-----tgatagtattgttctatatcttg |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
28030343 |
atagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttg |
28030410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 22601066 - 22601013
Alignment:
| Q |
100 |
ttgttagttttgattaaaattcttagttcaaaatagttatctcaaatatgtatt |
153 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
22601066 |
ttgttagttttgattgaaattcttggttcacaatagttatcataaatatgtatt |
22601013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University