View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11391_low_10 (Length: 503)

Name: NF11391_low_10
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11391_low_10
NF11391_low_10
[»] chr1 (6 HSPs)
chr1 (31-141)||(3607468-3607579)
chr1 (138-306)||(3607563-3607728)
chr1 (298-487)||(3607901-3608087)
chr1 (418-487)||(51157503-51157572)
chr1 (52-96)||(42606228-42606272)
chr1 (416-468)||(7371933-7371984)
[»] chr4 (1 HSPs)
chr4 (171-233)||(47475202-47475264)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 3607579 - 3607468
Alignment:
Q  31 tagaattcacaatttaatgattaaaatatatgaaaatttgtcatttgaatctttaacatcttaatagcataggttaaattgacatattttatgtacttta 130  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3607579 tagaattcacaatttaattattaaaatatatgaaaatttgtcattttaatctttaacatcttaatagcataggttaaattgacatattttatgtacttta 3607480  T
Q  131 -tgactacttaa 141  Q
     |||||||||||    
T  3607479 gtgactacttaa 3607468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 3607563 - 3607728
Alignment:
Q  138 ttaaattgtgaattctgtatattttagaaactgcttattatatttatatggtttagaaattaaactggagagatggtgatagtttagagaataaatattg 237  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3607563 ttaaattgtgaattctagattttttagaaactgcttattatatttatatggtttagaaattaaactggagagatggtgataatttagagaataaatattg 3607662  T
Q  238 annnnnnnnnnnnnnnacatcagcgagtaaattgattatttactcttagcagatccatcattatataaa 306  Q
    |               |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3607663 a---ttttttttttttacatgagcgagtaaattgattatttactcttaacagatccatcattatataaa 3607728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 298 - 487
Target Start/End: Original strand, 3607901 - 3608087
Alignment:
Q  298 ttatataaatatattgcacttttgcttaaaaaagaatagtgattttagtacatccatttgaagataactttattgttctcnnnnnnnattggtcaaaaat 397  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||       |||||||||||||    
T  3607901 ttatataaatatattgcacttttgcttaaaaaataataatgatttttgtacatccatttgaagacaactttattgttctctctttttattggtcaaaaat 3608000  T
Q  398 aatgaagagnnnnnnntaaggagagaggaaaataacatcatataagtgtgagagagagaaattgtacaaaatttatcacaaaattgatgt 487  Q
    |||| ||||       | | |||| || ||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  3608001 aatggagag--aaaaatgaagagaaagaaaaataacatcatctgagtgtgagagaga-aaattatacaaaatttatcacaaaattgatgt 3608087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 487
Target Start/End: Complemental strand, 51157572 - 51157503
Alignment:
Q  418 gagagaggaaaataacatcatataagtgtgagagagagaaattgtac-aaaatttatcacaaaattgatgt 487  Q
    |||||||||||| |||||||| | ||||||||| ||| ||||||||| |||| ||||||||||||||||||    
T  51157572 gagagaggaaaagaacatcatgtgagtgtgagaaaga-aaattgtacaaaaagttatcacaaaattgatgt 51157503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 42606272 - 42606228
Alignment:
Q  52 taaaatatatgaaaatttgtcatttgaatctttaacatcttaata 96  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  42606272 taaaatatatgaaaacttgtcagtttaatctttaacatcttaata 42606228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 7371933 - 7371984
Alignment:
Q  416 aggagagaggaaaataacatcatataagtgtgagagagagaaattgtacaaaa 468  Q
    ||||||||||| || | |||||||||||| ||||||||| |||||||||||||    
T  7371933 aggagagaggataagaccatcatataagtatgagagaga-aaattgtacaaaa 7371984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 47475202 - 47475264
Alignment:
Q  171 cttattatatttatatggtttagaaattaaactggagagatggtgatagtttagagaataaat 233  Q
    ||||| ||||||| || ||||||||| |||| | || ||| ||||||||||||||||||||||    
T  47475202 cttatcatatttacatagtttagaaactaaatttgatagacggtgatagtttagagaataaat 47475264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University