View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_low_11 (Length: 500)
Name: NF11391_low_11
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 485
Target Start/End: Complemental strand, 30719789 - 30719307
Alignment:
| Q |
3 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttct |
102 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||| ||||| |
|
|
| T |
30719789 |
caaagcatccatccatgcagttactattaccgggtatgaagatgtccctgccaacaatgagcaggcactgcagaaagctgtggcaaatcaaccaatttcc |
30719690 |
T |
|
| Q |
103 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgg |
202 |
Q |
| |
|
||||| |||||||||||||| || |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||| | |
|
|
| T |
30719689 |
gtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtag |
30719590 |
T |
|
| Q |
203 |
gttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacattaggatgcaaaggggcgt |
302 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
30719589 |
gttatggtgtcggtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaagatgcaaaggggagt |
30719490 |
T |
|
| Q |
303 |
agatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaaatta |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30719489 |
cgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactatgtaaatta |
30719390 |
T |
|
| Q |
403 |
tgctaaattaatgtggttgttcttgcatttagcagctacatagaatgtgatttgcgatttatgtatatacttgtgtatctatt |
485 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719389 |
tgctaaattaatgtggttgttcttccatttagcagctacatagaatgtgatttgcgatttatgtatatacttgtgtatctatt |
30719307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 398
Target Start/End: Complemental strand, 16867612 - 16867217
Alignment:
| Q |
3 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttct |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16867612 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccgaccaacaatgagcaggcactacaaaaagcagtggctaatcaaccgatttcc |
16867513 |
T |
|
| Q |
103 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
16867512 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggcgtctttactggttcatgcggaactgagttggatcatggtgttaccgccgtgg |
16867413 |
T |
|
| Q |
203 |
gttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacattaggatgcaaaggggcgt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || || |
|
|
| T |
16867412 |
gttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgaatggggtgaagaaggatacattatgatgcaaagaggtgt |
16867313 |
T |
|
| Q |
303 |
agatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaa |
398 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||| | |||| ||||| | ||||||| ||||||||||||| |
|
|
| T |
16867312 |
tgatgctgctgaaggactttgtggcattgcaatgcaagcatcataccctactgcttaaatgtcaaaattaatacttatgttatctaaactttgtaa |
16867217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 30881570 - 30881965
Alignment:
| Q |
3 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttct |
102 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||| ||||| |
|
|
| T |
30881570 |
caaagcatccatccatgcagttactattaccgggtatgaagatgtccctgccaacaatgagcaggcactgcagaaagctgtggcaaatcaaccaatttcc |
30881669 |
T |
|
| Q |
103 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgg |
202 |
Q |
| |
|
||||| |||||||||||||| || |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||| | |
|
|
| T |
30881670 |
gtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtag |
30881769 |
T |
|
| Q |
203 |
gttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacattaggatgcaaaggggcgt |
302 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
30881770 |
gttatggtgtcggtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattaagatgcaaaggggagt |
30881869 |
T |
|
| Q |
303 |
agatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaa |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881870 |
cgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaa |
30881965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 398
Target Start/End: Complemental strand, 44731211 - 44730830
Alignment:
| Q |
17 |
atgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgc |
116 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| || || |||||||| |||||||| ||||||||||| |
|
|
| T |
44731211 |
atgcagctaccattaccgggtatgaagatgtccctgccaacaatgagcaggcattgcaaaaagctgtcgcaaatcaacctatttctgttgccattgatgc |
44731112 |
T |
|
| Q |
117 |
tagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgttagt |
216 |
Q |
| |
|
|||||| || ||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
44731111 |
tagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatgtggaaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggt |
44731012 |
T |
|
| Q |
217 |
aatgatggaactaagtattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccgaag |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || |||| |
|
|
| T |
44731011 |
aatgatggaaccaagtattggttggttaagaactcatggggaactgattggggcgaagaaggatacattaggatgcaaaggggagtggatgccgctgaag |
44730912 |
T |
|
| Q |
317 |
gactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaa |
398 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || |||||||||||||||||| |
|
|
| T |
44730911 |
gactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaa |
44730830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 32 - 412
Target Start/End: Original strand, 30892682 - 30893062
Alignment:
| Q |
32 |
ctgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgctagtggttccgactt |
131 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| || |
|
|
| T |
30892682 |
ctggatatgaagatgtcccggcaaacaatgagaatgcactgcaaaaagcagtggctaatcaaccaatttccgtagccattgatgcgagtggctccgattt |
30892781 |
T |
|
| Q |
132 |
tcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgttagtaatgatggaactaag |
231 |
Q |
| |
|
||||| |||||||||||||| || || ||||||||||| || ||||||||||||||||||| || ||||||||||| |||||||||||||||| ||| |
|
|
| T |
30892782 |
ccaattttacaaaagtggtgtcttcactggttcatgtggtactcagttggatcatggtgttactgctgtgggttatggcattagtaatgatggaaccaag |
30892881 |
T |
|
| Q |
232 |
tattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattg |
331 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
30892882 |
tattggttggttaagaattcatggggaaatgattggggtgaagaaggatacattaggatgcaaaggagcgtagatgctgctcaaggactttgtggcattg |
30892981 |
T |
|
| Q |
332 |
caatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaaattatgctaaatta |
412 |
Q |
| |
|
||||| |||||||| || ||||||| | ||||||| || | ||| || || ||||| ||||||||||||||||||| |
|
|
| T |
30892982 |
caatgatggcatcttatcccactgcttgaaagacaaacttgatacttatattccccaaactatgtaaattatgctaaatta |
30893062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 28 - 397
Target Start/End: Original strand, 8899210 - 8899579
Alignment:
| Q |
28 |
attactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgctagtggttccg |
127 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| || | |
|
|
| T |
8899210 |
attaccgggtatgaagatgttcctgccaacaatgagcaagcactgcaaaaagcagtggcaaatcaaccaatttctgtagcaattgatgctagtggctctg |
8899309 |
T |
|
| Q |
128 |
actttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgttagtaatgatggaac |
227 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
8899310 |
actttcaattttacaaaagtggtgtatttaccggttcatgcggaactgagttggatcacggtgtcactgccgtaggttatggtgtcagtaatgatggaac |
8899409 |
T |
|
| Q |
228 |
taagtattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggc |
327 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| |||||||||||| || || || || ||||| || |||||| |
|
|
| T |
8899410 |
caagtattggttggttaagaactcatggggaactgattggggtgaagaaggttacattatgatgcaaaggggagttgaagctgctgaagggctctgtggc |
8899509 |
T |
|
| Q |
328 |
attgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgta |
397 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||| |
|
|
| T |
8899510 |
attgcaatgcaggcatcttaccctactgcttaaatgccaaacttaatacttatgttacctaaactttgta |
8899579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 59 - 356
Target Start/End: Original strand, 31727399 - 31727696
Alignment:
| Q |
59 |
atgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttac |
158 |
Q |
| |
|
||||||||||| | |||||||| || || ||||||||| |||| || ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
31727399 |
atgagcaggcattgcaaaaagccgtagctaatcaaccggtttcggtggccattgatgctagtggctctgacttccaattttacaaaagtggtgtatttac |
31727498 |
T |
|
| Q |
159 |
cggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttgggga |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | | || |||||||||||| || | |||| ||| ||||||||||||| || || || |||||| |
|
|
| T |
31727499 |
tggttcatgtggaactgagttggatcatggtgtagctgttgtaggttatggtgttggtgaagatgagactgagtattggttggtgaagaattcatgggga |
31727598 |
T |
|
| Q |
259 |
accgattggggtgaagaaggatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgc |
356 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||||| || ||||| | |||||||| ||||||||||||||| || ||||||| || ||||| |
|
|
| T |
31727599 |
actcaatggggtgaagaagggtacattaggatgcaaaggggtgtggatgcttcagaaggactatgtggcattgcaatgcaaccatcttatccaactgc |
31727696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 4744877 - 4744959
Alignment:
| Q |
202 |
ggttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgattggggtgaagaaggatacat |
284 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||||||||| |||| || |||||||| | | ||||||||||||||| ||||| |
|
|
| T |
4744877 |
ggttacggtgtaagtgaagatggaactaagtattggttgattaagaattcttggggtaaaggttggggtgaagaaggctacat |
4744959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University