View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_low_12 (Length: 476)
Name: NF11391_low_12
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_12 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 6145483 - 6145045
Alignment:
| Q |
17 |
aatgttgtggctgattgttatgatggaaagtgtgatgatggtggagcagggagaatggtgtgaattagttcttaattttacattgattaaattctaaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145483 |
aatgttgtggctgattgttatgatggaaagtgtgatgatggtggagcagggagaatggtgtgaattagttcttaattttacattgattaaattctaaaat |
6145384 |
T |
|
| Q |
117 |
ttcatctaatgatggctggaatactatatatgtttgcatgtagtaaagttgtataatgtgtaaaattggtttttaattctgtgttagttactttgctttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6145383 |
ttcatctaatgatggctggaatactatatatgtttgcatgtagtaaagttgtataatatgtaaatttggtttttaattgtgtgttagttactttgctttg |
6145284 |
T |
|
| Q |
217 |
aactgatttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145283 |
aactgatttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaa |
6145184 |
T |
|
| Q |
317 |
gaaaattatgagtattttcaatgc-aaaagtaccacattctcttaatttttgtactaacatagtaacataccaatcttgtactgcggtgcccatgaaaag |
415 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6145183 |
gaaaattatgagtattttcaatgcaaaaagtaccacattctcttaattt----------------acataccaatcttgtactgcggtgcccatgaaaat |
6145100 |
T |
|
| Q |
416 |
agtataagttgacaaaacgtaacatacggggaaagtccttgttcttctctctcgac |
471 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||| |
|
|
| T |
6145099 |
agtataagttgacaaaacgtaacattcgggg-aagtccttgttctcctttctcgac |
6145045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 471
Target Start/End: Complemental strand, 11596 - 11529
Alignment:
| Q |
404 |
gcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgttcttctctctcgac |
471 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||||||||||||||| | || ||||||| |
|
|
| T |
11596 |
gcccatgaaaatagtatatgttgacaaaacgtaacattaggggaaagtccttgttgtcctttctcgac |
11529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University