View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_13 (Length: 448)
Name: NF11391_low_13
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 30503838 - 30503414
Alignment:
| Q |
9 |
aaaggaaacgtccaccacaacaacaaccacaacagcttcagcttcagcagcaacaaccaatgcaattgcaattgcctcttcatcttcatcatcaccatca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503838 |
aaaggaaacgtccaccacaacaacaaccacaacagcttcagcttcagcagcaacaaccaatgcaattgcaattgcctcttcatcttcatcatcaccatca |
30503739 |
T |
|
| Q |
109 |
acatcagcttccacctccaggtgcaactcaataaaatggctattctcatattccatggaaaaaactatctttatttatctcaagtcatgaatattattaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503738 |
acatcagcttccacctccaggtgcaactcaataaaatggctattctcatattccatggaaaaaactatctttatttatctcaagtcatgaatattattaa |
30503639 |
T |
|
| Q |
209 |
ttgtctaattaattttaagtactagtagtagctagtaggtttaggttttatttatttgtcagttaaattttgtgaaagatttctggttgtcattaaattg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30503638 |
ttgtctaattaattttaagtactagtagtagctagtaggtttaggttttatttatttgtcagttaaattttgtgaaagatttctggttgtcattaatttg |
30503539 |
T |
|
| Q |
309 |
ttgtattgtatgtatgtatgtattctgcttggtgtagcagaaattaaagataagattatgaatcatcatgttttataatgacaacagttaattaatggta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503538 |
ttgtattgtatgtatgtatgtattctgcttggtgtagcagaaattaaagataagattatgaatcatcatgttttataatgacaacagttaattaatggta |
30503439 |
T |
|
| Q |
409 |
cttatagtaatctgttagttgaagt |
433 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30503438 |
cttatagtaatctgttagttgaagt |
30503414 |
T |
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