View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_15 (Length: 414)
Name: NF11391_low_15
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 46734373 - 46734028
Alignment:
| Q |
11 |
gaagaaacagatgagatgttgattcgccgtgtccgcaccccgccacacacctgatagcctcggcttgaataaaaccacggcgcaaaagattgttttttgt |
110 |
Q |
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| T |
46734373 |
gaagaaacagatgagatgctgattcgccgtgtccgcaccccgtcacgcacctgatagcctcggcttgaataataccacggtgcaaaagattgttttttgt |
46734274 |
T |
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| Q |
111 |
tggcagcctatcgtgcatcaatctccaagcaagaattttagataatgggttgaaaagagattgtttacaacactcccaaataaataatataaatggagaa |
210 |
Q |
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| T |
46734273 |
tggcagcctatcgtgcatcaatctccaagcaagaattttagataaagggttgaaaagagattgtttacaacactcccaaataaataatataaatggagaa |
46734174 |
T |
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| Q |
211 |
tagataaatgaagtaaatttaaattcctaattccaaaattcgtttgtgtattttcaaccgtttgtttgaaccagtccattttgaaaactagaattggaag |
310 |
Q |
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| T |
46734173 |
tagataaatgaagtaaatttaaattcctaattccaaaattcgtttgtgtattttcaaccgtttgtttaaaccagcccattttgaaagctagaattggaag |
46734074 |
T |
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| Q |
311 |
agaggtattgcagcatttgcttggtgaaaatgaaaagtacatacta |
356 |
Q |
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| T |
46734073 |
agaggtattgctgcatttgcttggtgaaaatgaaaagtacatacta |
46734028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 34337841 - 34337945
Alignment:
| Q |
42 |
tccgcaccccgccacacacctgatagcctcggcttgaataaaaccacggcgcaaaagattgttttttgttggcagcctatcgtgcatcaatctccaagca |
141 |
Q |
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| T |
34337841 |
tccgcaccccgccacacacctaatgttgtcagcttggataatgccacgtcgaatgaggttattttttgttggcagcctatcacgcaacaatctccaagca |
34337940 |
T |
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| Q |
142 |
agaat |
146 |
Q |
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||||| |
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| T |
34337941 |
agaat |
34337945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 21548160 - 21548117
Alignment:
| Q |
103 |
ttttttgttggcagcctatcgtgcatcaatctccaagcaagaat |
146 |
Q |
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| T |
21548160 |
ttttttgttggcagcctataatgcaacaatctccaagcaagaat |
21548117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 33281048 - 33281151
Alignment:
| Q |
43 |
ccgcaccccgccacacacctgatagcctcggcttgaataaaaccacggcgcaaaagattgttttttgttggcagcctatcgtgcatcaatctccaagcaa |
142 |
Q |
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||||||||| |||||||||| || || ||||| |||| ||||| |||| ||| || ||||||||||||||||| || ||| |||||||||||||| |
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| T |
33281048 |
ccgcaccccaccacacacctaatgttgtccgcttggataatgccacgccgcataaggttattttttgttggcagcctgtcacgcaacaatctccaagcaa |
33281147 |
T |
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| Q |
143 |
gaat |
146 |
Q |
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|||| |
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| T |
33281148 |
gaat |
33281151 |
T |
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