View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_low_18 (Length: 397)
Name: NF11391_low_18
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 38 - 397
Target Start/End: Original strand, 54472110 - 54472481
Alignment:
| Q |
38 |
ccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54472110 |
ccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttg |
54472209 |
T |
|
| Q |
138 |
tcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatattttta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54472210 |
tcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatattttta |
54472309 |
T |
|
| Q |
238 |
tatatctcctatttcnnnnnnnaataggaatttgcaaataagcatgttatgaagtttagaatagttaatggaggaag------------ttaattaatta |
325 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
54472310 |
tatatctcctatttctttttttaataggaatttgcaaataagcatgttatgaagtttagaatagttaatgggggaagctaattaattaattaattaatta |
54472409 |
T |
|
| Q |
326 |
atgattcatagcctattcttannnnnnngatcagaaatggatcctctaaagcttttgcatggtgccatagtc |
397 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54472410 |
atgattcatagcctattcttatttttttgatcagaaatggatcctctaaagcttttgcatggtgccatagtc |
54472481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University