View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11391_low_21 (Length: 368)

Name: NF11391_low_21
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11391_low_21
NF11391_low_21
[»] chr5 (4 HSPs)
chr5 (32-143)||(13423123-13423234)
chr5 (31-157)||(13428847-13428962)
chr5 (185-351)||(13429011-13429155)
chr5 (39-95)||(28016-28072)
[»] chr7 (2 HSPs)
chr7 (110-158)||(1523866-1523914)
chr7 (105-152)||(9796302-9796349)
[»] chr1 (6 HSPs)
chr1 (113-158)||(10200317-10200362)
chr1 (112-152)||(5338938-5338978)
chr1 (96-158)||(25715337-25715399)
chr1 (112-158)||(39140740-39140786)
chr1 (117-158)||(43898439-43898480)
chr1 (113-157)||(50257796-50257840)
[»] chr6 (2 HSPs)
chr6 (32-95)||(6055863-6055926)
chr6 (96-152)||(586059-586115)
[»] chr4 (2 HSPs)
chr4 (110-157)||(1793685-1793732)
chr4 (96-158)||(51421939-51422001)
[»] chr2 (5 HSPs)
chr2 (104-159)||(20900562-20900617)
chr2 (96-158)||(17429259-17429321)
chr2 (112-158)||(25384694-25384740)
chr2 (112-158)||(42549848-42549894)
chr2 (33-90)||(13149460-13149517)
[»] chr8 (2 HSPs)
chr8 (105-158)||(30689953-30690006)
chr8 (95-139)||(41035082-41035126)
[»] chr3 (1 HSPs)
chr3 (105-158)||(35481146-35481199)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 13423123 - 13423234
Alignment:
Q  32 gtagagaaagacttataaaaattattagagaaacaattatgaaagatttataggttaataagtttgatagcatattacgacgtaatttgattcatgtagc 131  Q
    ||||||||||||||| ||||||||  ||| |||||||||||||||||||||| |||| | |||||||||| | ||||||||| ||||| ||||||| ||     
T  13423123 gtagagaaagacttacaaaaattagaagaaaaacaattatgaaagatttataagttattgagtttgatagaacattacgacgcaatttaattcatgcagt 13423222  T
Q  132 caacctcactta 143  Q
    | ||||||||||    
T  13423223 cgacctcactta 13423234  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 13428847 - 13428962
Alignment:
Q  31 tgtagagaaagacttataaaaattattagagaaacaattatgaaagatttataggttaataagtttgatagcatattacgacgtaatttgattcatgtag 130  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||            ||||||||||||||| |    
T  13428847 tgtagaggaaaacttataaaaattattagagaaacaa-tatgaaagatttataggttaataagatttatag----------gttaatttgattcatgtgg 13428935  T
Q  131 ccaacctcacttaatgagataatgctt 157  Q
    ||||||||| |||||| ||||||||||    
T  13428936 ccaacctcatttaatgggataatgctt 13428962  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 351
Target Start/End: Original strand, 13429011 - 13429155
Alignment:
Q  185 atattgatctcttaattaattaatattacgtttaaataccttaacgttacttctcttaatcaagttggtctaatttcgttaaattttaactgcaatgtct 284  Q
    |||||| || |||||||||||||||||| |||||| ||||||||| ||       ||| |||| ||||||||||| | ||||||||||||| |||| ||     
T  13429011 atattggtcccttaattaattaatattatgtttaagtaccttaacatt-------ttagtcaatttggtctaattccattaaattttaacttcaatatcg 13429103  T
Q  285 aatatggacacacattataaatggtccataaaagacctcattaatttgttaagtattaattgtttga 351  Q
    ||||||||||              |||||||||||||||||||||||||||||  ||||||||||||    
T  13429104 aatatggacaa-------------tccataaaagacctcattaatttgttaag--ttaattgtttga 13429155  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 28016 - 28072
Alignment:
Q  39 aagacttataaaaattattagagaaacaattatgaaagatttataggttaataagtt 95  Q
    ||||| || ||||| ||| |||||||| |||| |||||||||| |||||||||||||    
T  28016 aagacctagaaaaactataagagaaactattaggaaagatttagaggttaataagtt 28072  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 1523866 - 1523914
Alignment:
Q  110 gacgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  1523866 gacgtaatttgattcatgtagccaacctcacttagggagataaggcttg 1523914  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 9796302 - 9796349
Alignment:
Q  105 attacgacgtaatttgattcatgtagccaacctcacttaatgagataa 152  Q
    |||| ||||||||| ||||||||||||| ||||||||||||| |||||    
T  9796302 attatgacgtaattcgattcatgtagccgacctcacttaatgggataa 9796349  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 10200362 - 10200317
Alignment:
Q  113 gtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||    
T  10200362 gtaatttgatccatgtagccgacctcacttaatgggataatgcttg 10200317  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 5338938 - 5338978
Alignment:
Q  112 cgtaatttgattcatgtagccaacctcacttaatgagataa 152  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  5338938 cgtaatttgatccatgtagccaacctcacttagtgagataa 5338978  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 25715399 - 25715337
Alignment:
Q  96 tgatagcatattacgacgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||||| |||||| | ||||||||||| ||||||||| |||||||||| || ||||| |||||    
T  25715399 tgatagaatattatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttg 25715337  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 39140740 - 39140786
Alignment:
Q  112 cgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    ||||||||||||||||||||| ||| |||||| || |||||||||||    
T  39140740 cgtaatttgattcatgtagccgaccccacttagtgggataatgcttg 39140786  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 43898439 - 43898480
Alignment:
Q  117 tttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||||||||||||||||||| |||||| || |||||||||||    
T  43898439 tttgattcatgtagccaaccccacttagtgggataatgcttg 43898480  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 50257796 - 50257840
Alignment:
Q  113 gtaatttgattcatgtagccaacctcacttaatgagataatgctt 157  Q
    |||||||||| ||||||||||||| |||||| |||||||| ||||    
T  50257796 gtaatttgatccatgtagccaaccccacttagtgagataaggctt 50257840  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 6055926 - 6055863
Alignment:
Q  32 gtagagaaagacttataaaaattattagagaaacaattatgaaagatttataggttaataagtt 95  Q
    |||||| ||||| |||||||| | | |||||||| ||||||||||||||| |||||||| ||||    
T  6055926 gtagaggaagacctataaaaactttaagagaaactattatgaaagatttagaggttaatgagtt 6055863  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 586059 - 586115
Alignment:
Q  96 tgatagcatattacgacgtaatttgattcatgtagccaacctcacttaatgagataa 152  Q
    |||||| | |||| ||||| |||||||||||| |||| ||||||||||||| |||||    
T  586059 tgatagaacattatgacgtcatttgattcatggagccgacctcacttaatgggataa 586115  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 1793685 - 1793732
Alignment:
Q  110 gacgtaatttgattcatgtagccaacctcacttaatgagataatgctt 157  Q
    ||||||||||||||||||||||| | |||||||| |||||||| ||||    
T  1793685 gacgtaatttgattcatgtagccgatctcacttagtgagataaggctt 1793732  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 51421939 - 51422001
Alignment:
Q  96 tgatagcatattacgacgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||||| | |||| ||||||||||||| ||||||||||| |||||||| || ||||| |||||    
T  51421939 tgatagaacattatgacgtaatttgatccatgtagccaatctcacttagtgggataaagcttg 51422001  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 20900562 - 20900617
Alignment:
Q  104 tattacgacgtaatttgattcatgtagccaacctcacttaatgagataatgcttga 159  Q
    ||||| |||||| |||||| ||||||||| |||||||||||| |||||| ||||||    
T  20900562 tattatgacgtagtttgatccatgtagccgacctcacttaattagataaggcttga 20900617  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 17429259 - 17429321
Alignment:
Q  96 tgatagcatattacgacgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||||| | |||| ||| ||||||||||||||||||| ||| |||||| |||||||| |||||    
T  17429259 tgatagaacattatgacataatttgattcatgtagccgaccccacttagtgagataaggcttg 17429321  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 25384694 - 25384740
Alignment:
Q  112 cgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    ||||||||||| |||||||||||||||||||| || ||||| |||||    
T  25384694 cgtaatttgatccatgtagccaacctcacttagtgggataaggcttg 25384740  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 42549894 - 42549848
Alignment:
Q  112 cgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    ||||||||||||||||||||||||| |||||| || ||||| |||||    
T  42549894 cgtaatttgattcatgtagccaaccccacttagtgggataaagcttg 42549848  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 13149460 - 13149517
Alignment:
Q  33 tagagaaagacttataaaaattattagagaaacaattatgaaagatttataggttaat 90  Q
    ||||| ||||||||  |||| ||| |||||||| ||||||||||||||| ||||||||    
T  13149460 tagaggaagacttaggaaaactataagagaaactattatgaaagatttagaggttaat 13149517  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 30689953 - 30690006
Alignment:
Q  105 attacgacgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||| ||||||||||||| ||||||||| ||| |||||| || |||||||||||    
T  30689953 attatgacgtaatttgatccatgtagccgaccccacttagtgggataatgcttg 30690006  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 41035126 - 41035082
Alignment:
Q  95 ttgatagcatattacgacgtaatttgattcatgtagccaacctca 139  Q
    ||||||| | |||| | ||||||||||||||||||||||||||||    
T  41035126 ttgatagaacattatggcgtaatttgattcatgtagccaacctca 41035082  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 35481146 - 35481199
Alignment:
Q  105 attacgacgtaatttgattcatgtagccaacctcacttaatgagataatgcttg 158  Q
    |||| ||||||||||||||||| ||||| ||| ||||||||| ||||| |||||    
T  35481146 attatgacgtaatttgattcatttagccgaccccacttaatgggataaggcttg 35481199  T

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