View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_22 (Length: 363)
Name: NF11391_low_22
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 39591287 - 39590951
Alignment:
| Q |
17 |
aagttatatgtgaaatatttccccaagaagctaaaataggctgttagtaggagggtaactgattaggtttgtgatactcctctcagatacttcacatgca |
116 |
Q |
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| T |
39591287 |
aagttatatgtgaaatatttccccaagaagctaaaataggctgttagtaggagtgtaactgattaggtttgtgatgctcctctcagatacttcacatgca |
39591188 |
T |
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| Q |
117 |
ttattcttctgcttcgagttctctgcttttgagaaacactatgagagtttagtctctaaagtgagattcatttgat--------ttcggtagctaaaaat |
208 |
Q |
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| T |
39591187 |
ttattcttctgcttcgagttctctgcttttgagaaacactatgagagtttagtctctaaagtgagattcatttgatttcttttcttcggtagctaaaaat |
39591088 |
T |
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| Q |
209 |
aatactccgtatatgtttgagttattcatttggatcaattagtaccattatggtgtttgctcta-tannnnnnnnnnnnngaaggcaatcattcgcgata |
307 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
39591087 |
aata----gtatatgtttgagttattcatttggatcaattagtaccattatggtgtttgctctattttttttttttttttgaaggcaatcattcgcgata |
39590992 |
T |
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| Q |
308 |
tgcaagcaatcctttaagtctgagtcctcatcttatttcat |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39590991 |
tgcaagcaatcctttaagtctgagtcctcatcttatttcat |
39590951 |
T |
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