View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_24 (Length: 334)
Name: NF11391_low_24
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 51487460 - 51487151
Alignment:
| Q |
15 |
aaaaagaacatgaaattaccgaacctaatcaactaactnnnnnnntgtacattcccagttggatttctaacatatgtttacactggatcattggtttctc |
114 |
Q |
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| T |
51487460 |
aaaaagaacatgagattaccgaacgtaatcaactaactaaaaaaatgtacattcccagttggatttctaacatatgtttacactggatcattggtttctc |
51487361 |
T |
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| Q |
115 |
caaacctgtaaattgaatacatccatcaatttcatgaaacacgcacaataaatgcaaattttaaatcgcgagcctagagaatcggacaaaagaatgtgta |
214 |
Q |
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| T |
51487360 |
caaacctgtaaattgaatacatccatcaatttcatgaaacacacacaataaatgcaaattttaaatcgcgagcctagagaatcggacaaaagaatgtgta |
51487261 |
T |
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| Q |
215 |
catgagatataatctaccaacgcctttgagagcaaagcagtatatcaagaaacacaagtatatcaaattcataaccaaagggagaggaagtttgcaatca |
314 |
Q |
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| T |
51487260 |
catgagatataatctaccaatgcctttgagagcaaagcagtatatcaagaaacacaagtatatcaaattcataaccaaagggagaggaagtttgcaatca |
51487161 |
T |
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| Q |
315 |
gtaacctttg |
324 |
Q |
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|||||||||| |
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| T |
51487160 |
gtaacctttg |
51487151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 30199163 - 30199224
Alignment:
| Q |
91 |
tttacactggatcattggtttctccaaacctgtaaattgaat-acatccatcaatttcatga |
151 |
Q |
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|||||| |||| | |||||||||||| ||||||||||||||| ||| |||||||||||||| |
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| T |
30199163 |
tttacattggaaccttggtttctccagacctgtaaattgaatgacagacatcaatttcatga |
30199224 |
T |
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