View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_28 (Length: 317)
Name: NF11391_low_28
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_28 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 21191122 - 21191418
Alignment:
| Q |
1 |
gacattatggaaataaggggaccaaacatacatagaagggatcagaaataaactctacgacattattgaagagctcaagtatactttataaacattcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21191122 |
gacattatggaaataaggggaccaaacatacatagaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcata |
21191221 |
T |
|
| Q |
101 |
gcttgttggatttgatcaaagtgagcggattgatatgttggtaatgacatgcgaatttgtaacaaccattcaaatttagcccctaaatattttgaaatag |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21191222 |
gcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattc-aatttagcccctaaatattttgaaatag |
21191320 |
T |
|
| Q |
201 |
cacgataggattctcacgatagatttcagatcaagaaactaggattcaatttgaaatctaggcctagagtagcaacgataggtttctcacgataacag |
298 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| |
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| T |
21191321 |
cacgataggattctcatgatagatttcagatcaagaaactaggattcaatttgtaatctaggcctagattagcaacgataggattctcacaataacag |
21191418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 36466411 - 36466134
Alignment:
| Q |
1 |
gacattatggaaataaggggaccaaacatacatagaagggatcagaaataaactctacgacattattgaagagctcaagtatactttataaacattcata |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36466411 |
gacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcata |
36466312 |
T |
|
| Q |
101 |
gcttgttggatttgatcaaagtgagcggattgatatgttggtaatgacatgcgaatttgtaacaaccattcaaatttagcccctaaatattttgaaatag |
200 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36466311 |
gcttgttggatttgatgaaagtgagtggattgatatgttggcaatggcatgcaaatttgtaacaaccattc-aatttagcccctaaatattttgaaatag |
36466213 |
T |
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| Q |
201 |
cacgataggattctcacgatagatttcagatcaagaaactaggattcaatttgaaatctaggcctagagtagcaacgataggtttctcacgat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||| | || | |||||||| |||||||||| |
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| T |
36466212 |
--------------cacgatagatttcagatcaagaaactaggattcaatttgtaaggtaggcctaaattaccgacgataggattctcacgat |
36466134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 298
Target Start/End: Original strand, 36471206 - 36471387
Alignment:
| Q |
104 |
tgttggatttgatcaaagtgagcggattgatatgttggtaatgacatgcgaatttgtaacaaccattcaaatttagcccctaaatattttgaaatagcac |
203 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
36471206 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccgttc-aatttagcccctaaatattttgaaatag--- |
36471301 |
T |
|
| Q |
204 |
gataggattctcacgatagatttcagatcaagaaactaggattcaatttgaaatctag--gcctagagtagcaacgataggtttctcacgataacag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||| |||| | || |||||||||| ||||||||||||||| |
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| T |
36471302 |
-----------cacgatagatttcagatcaagaaactaggattcaatttgtaatgtagccacctaaattaccaacgataggattctcacgataacag |
36471387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 104 - 294
Target Start/End: Complemental strand, 29389630 - 29389441
Alignment:
| Q |
104 |
tgttggatttgatcaaagtgagcggattgatatgttggtaatgacatgcgaatttgtaacaaccattcaaatttagcccctaaatattttgaaatagcac |
203 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29389630 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcgaatttgtaacaaccattcaa-tttagcccctaaatattttgaaatagcac |
29389532 |
T |
|
| Q |
204 |
gataggattctcacgatagatttcagatcaagaaactaggattcaatttgaaatctaggcctagagtagcaacgataggtttctcacgata |
294 |
Q |
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| T |
29389531 |
tataggattctcacgatagatttcagatcaagaaactaggattcaatttgtaatctaggcctagattagcaacgataggattctcacgata |
29389441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 29390503 - 29390575
Alignment:
| Q |
222 |
gatttcagatcaagaaactaggattcaatttgaaatctaggcctagagtagcaacgataggtttctcacgata |
294 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
29390503 |
gatttcagatcaaaaaactaggattcaatttgtaatctaggcctagattagcaacgataggattctcacgata |
29390575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 8697363 - 8697461
Alignment:
| Q |
2 |
acattatggaaataagg-ggaccaaacatacatagaagggatcagaaataaactctacgacattattgaagagctcaagtatactttataaacattcat |
99 |
Q |
| |
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|||||| ||| |||||| |||||| ||||| |||||||||||| | ||||||||||| |||| ||||||||||| |||| || |||||| |||||||| |
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| T |
8697363 |
acattaaggagataaggaggaccatacatatgtagaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat |
8697461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 18388615 - 18388688
Alignment:
| Q |
26 |
acatacatagaagggatcagaaataaactctacgacattattgaagagctcaagtatactttataaacattcat |
99 |
Q |
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|||||||| |||| ||||||| ||||||||||| |||| ||| ||||||| |||| || ||||||||| ||||| |
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| T |
18388615 |
acatacatggaagagatcagagataaactctacaacataattaaagagcttaagtttattttataaacgttcat |
18388688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 18608 - 18528
Alignment:
| Q |
20 |
gaccaaacatacatagaagggatcagaaataaactctacgacattattgaagagctcaagtatactttataaacattcata |
100 |
Q |
| |
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||||| ||||| |||||||||||| | ||||||||||| |||| ||||||||||| |||| || |||||| ||||||||| |
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| T |
18608 |
gaccatacatatgtagaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcata |
18528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 20110 - 20189
Alignment:
| Q |
20 |
gaccaaacatacatagaagggatcagaaataaactctacgacattattgaagagctcaagtatactttataaacattcat |
99 |
Q |
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||||| ||||| |||||||||||| | ||||||||||| |||| ||||||||||| |||| || |||||| |||||||| |
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| T |
20110 |
gaccatacatatgtagaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat |
20189 |
T |
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