View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_29 (Length: 310)
Name: NF11391_low_29
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 30797544 - 30797826
Alignment:
| Q |
12 |
atgaattgcctacctttactatctggtgttttaatgtatttaggagatagacgaatgattaaggcacattaataatgggagagaatgattggttaagaga |
111 |
Q |
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| T |
30797544 |
atgaaatgcctacctttactatttggtgttttaatgtatttaggagatagacgaatgattaaggcacattaataatgggagagaatgattggttaagaga |
30797643 |
T |
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| Q |
112 |
gatagattcaaacgaagagactattctaacatagtctaaaagcattttagagagacatccaatcatatagtatcataacaaccctctacattttttaaag |
211 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30797644 |
gatagattcaaagtaagagactcttctaacatagtctaaaagcattttagagagacatccaatcatatagtatcataacaacactctacattttttaaag |
30797743 |
T |
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| Q |
212 |
aaaaacatctttacaaatatctacatgatgacatatgacttgacgtgtgtgtaaaatctatttgcacagacaatgcatacaac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30797744 |
aaaaacatctttacaaatatctacatgatgacatatgacttgacgtgtgtgtaaaatctatttgcatagacaatgcatacaac |
30797826 |
T |
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