View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_33 (Length: 280)
Name: NF11391_low_33
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 17275702 - 17275520
Alignment:
| Q |
1 |
tccactaataccagcattagagagtgtccctccaatggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaac |
100 |
Q |
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| T |
17275702 |
tccactaataccagcattagagagtgtccctccaatagttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaac |
17275603 |
T |
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| Q |
101 |
acatcaatccatagttgttcccctccaacatcaacatagtatccaaatccaaccttaggatcctcaaaaaccttaattccaac |
183 |
Q |
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| T |
17275602 |
acatcaatccatagttgttcccctccaacatcaacatagtatccaaatccaaccttaggatcctcaaaaacctcaattccaac |
17275520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 17275480 - 17275440
Alignment:
| Q |
223 |
caatcttctcaaccctttcatgtcaacaacaacaccatcac |
263 |
Q |
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| T |
17275480 |
caatcttctcaaccctttcatgtcaacaacaacaccatcac |
17275440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 17243450 - 17243362
Alignment:
| Q |
50 |
taatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacata |
138 |
Q |
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| T |
17243450 |
taatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacatcaacata |
17243362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 52443540 - 52443396
Alignment:
| Q |
2 |
ccactaataccagcattagagagtgtccctccaatggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaaca |
101 |
Q |
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| T |
52443540 |
ccactaattccagcattggaaagtgttcctccaaccgtgaggtaaagatagtcagtccaagaaacaggtgcaagtccatgttcaagtgttgcatacaaaa |
52443441 |
T |
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| Q |
102 |
catcaatccatagttgttcccctccaacatcaacatagtatccaa |
146 |
Q |
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| T |
52443440 |
catcaatccatagttgttctcctccaacatcaacatagtaaccaa |
52443396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 52454579 - 52454716
Alignment:
| Q |
1 |
tccactaataccagcattagagagtgtccctccaatggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaac |
100 |
Q |
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|||||||||||||||||||||||| || || |||| | ||| || | ||||||||||||||||| |||| |||||| | ||||| || ||| |||| |
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| T |
52454579 |
tccactaataccagcattagagagagttccaccaaccgataaatacaaataatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaac |
52454678 |
T |
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| Q |
101 |
acatcaatccatagttgttcccctccaacatcaacata |
138 |
Q |
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| T |
52454679 |
acatcaatccaacgttgtccaccaccaacatctacata |
52454716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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