View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_34 (Length: 268)
Name: NF11391_low_34
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 41541889 - 41542124
Alignment:
| Q |
31 |
agatattcaatttccctaaacctaataattcaattcattcgtttttcagttcagaattcactcgaagtttactcatcaatctcaccaacggaaactcatc |
130 |
Q |
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| T |
41541889 |
agatattcaatttccctaaacctaataattcaattcattcgtttttcagttcagaattcactcgaagtttactcatcaatctcaccaacggaaactcatc |
41541988 |
T |
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| Q |
131 |
gatcattctcatcaatcgattcagaaatcactgtactctttcagattccaactggttcgttctcttctaatctcaaatcatgatttatcgtaatcatcat |
230 |
Q |
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| T |
41541989 |
gatcattctcatcaatcgattcagaaatcactgtactctttcagattccaactggttcgttctcttctaatctcaaatcatgatttgtcgtaatcatcat |
41542088 |
T |
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| Q |
231 |
ttttgtttaatttctatgttcttcacagcttctgtg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41542089 |
ttttgtttaatttctatgttcttcacagcttctgtg |
41542124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 266
Target Start/End: Original strand, 41557651 - 41557888
Alignment:
| Q |
39 |
aatttccctaaacctaataattcaat-tcattcgttttt-cagttcagaattcactcgaagtttactcatcaatctcaccaacggaaactcatcgatcat |
136 |
Q |
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||||||||||| | ||| ||||||| |||||||||||| || ||||| |||||||||||||| || | || || |||||| |||| ||| ||||||| |
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| T |
41557651 |
aatttccctaaccttaactattcaatctcattcgttttttcaattcagttttcactcgaagtttgctagttaacctaaccaacagaaaatcaccgatcat |
41557750 |
T |
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| Q |
137 |
tctcatcaatcgattcagaaatcactgtactctttcagattccaactggttcgttctcttctaatctcaaa--------tcatgatttatcgtaatcatc |
228 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||| ||||||| |
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| T |
41557751 |
cctcatcgatcgattcaaaaatcactgtactctttcagattccaactggttcgttccattcttatctcaaatctcacattcatcatttatcgcaatcatc |
41557850 |
T |
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| Q |
229 |
atttttgtttaatttctatgttcttcacagcttctgtg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41557851 |
atttttgtttaatttctatgttcttcacagcttctgtg |
41557888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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