View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_36 (Length: 259)
Name: NF11391_low_36
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 54472651 - 54472899
Alignment:
| Q |
4 |
agtatgtcttataatgctaataagtgggagagtcaattaagcgaagcgagagtgacatgcctttttgaaccaacacagttacacgaaggtaagttgcgtg |
103 |
Q |
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| T |
54472651 |
agtatgtgttataatgctaataagtgggagagtcaattaagcgaagcgagagtgacatgcctttttgaaccaacacagttacacgaaggtaagttgcgag |
54472750 |
T |
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| Q |
104 |
gggtgattaggggcgcgggtttgaagcctgaaccgtaatatataaatacaagttgtacaatttaaatcctaatcttttaagatgacgatgatagaaagga |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54472751 |
gggtgattagggacgcgggtttgaagcctgaaccgtaatatataaatacaagttgtacaatttaaatcctattcttttaagatgacgatgatagaaagga |
54472850 |
T |
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| Q |
204 |
actgcacaattggtataactttgttaccaaacatatgtgttctctgctt |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472851 |
actgcacaattggtataactttgttaccaaacatatgtgttctctgctt |
54472899 |
T |
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