View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11391_low_4 (Length: 650)

Name: NF11391_low_4
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11391_low_4
NF11391_low_4
[»] chr3 (5 HSPs)
chr3 (329-635)||(26746719-26747024)
chr3 (17-124)||(26746530-26746638)
chr3 (312-457)||(32993309-32993454)
chr3 (231-315)||(42794709-42794793)
chr3 (231-315)||(46428779-46428863)
[»] chr7 (3 HSPs)
chr7 (216-454)||(3237810-3238040)
chr7 (229-391)||(45752617-45752779)
chr7 (363-446)||(26878301-26878386)
[»] chr6 (2 HSPs)
chr6 (264-455)||(26208605-26208796)
chr6 (231-315)||(1222872-1222956)
[»] chr2 (5 HSPs)
chr2 (213-421)||(27889593-27889802)
chr2 (236-404)||(42160966-42161134)
chr2 (340-429)||(981385-981474)
chr2 (229-315)||(26381156-26381242)
chr2 (235-377)||(17290190-17290332)
[»] chr8 (3 HSPs)
chr8 (250-398)||(40536277-40536425)
chr8 (231-315)||(9031488-9031572)
chr8 (231-404)||(20669984-20670157)
[»] chr4 (2 HSPs)
chr4 (278-425)||(15828359-15828506)
chr4 (229-331)||(4228378-4228480)
[»] chr1 (4 HSPs)
chr1 (252-429)||(12673182-12673359)
chr1 (250-430)||(41949658-41949840)
chr1 (340-428)||(43326460-43326548)
chr1 (231-315)||(22065093-22065177)
[»] chr5 (2 HSPs)
chr5 (231-315)||(18934276-18934360)
chr5 (235-315)||(4560212-4560292)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-160; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 329 - 635
Target Start/End: Original strand, 26746719 - 26747024
Alignment:
Q  329 aaaaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacg 428  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26746719 aaaaactcaagtttgctagccagtcagcatatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacg 26746818  T
Q  429 tcttatcaaggaaggaatggctccattgaaaaagtgcatccaaaccttcaatatatgctaacaggactatcccatttcattgtgaaatctgcttaacttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26746819 tcttatcaaggaaggaatggctccattgaaaaagtgcatccaaaccttcaatatatgctaacaggactatcccatttcattgtgaaatctgcttaacttg 26746918  T
Q  529 ccctccctttcttcaagctcctcataaaagaggcagccttcaagtggatcctatgaatgtgaagttggtctcacacatgtcaaacattcgttatcaagac 628  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26746919 ccctccctttcttcaagctcctcagaaaagaggcagccttcaagtggat-ctatgaatgtgaagttggtctcacacatgtcaaacattcgttatcaagac 26747017  T
Q  629 ctgatgt 635  Q
    || ||||    
T  26747018 ctcatgt 26747024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 26746530 - 26746638
Alignment:
Q  17 tgaacctcaaacccgttaacatttaactcaaaacagttgaactacacaaacgttcttatatatgacact-aatggcatagacatgacctcaggtcaggag 115  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||    
T  26746530 tgaacctcaaactctttaacatttaactcaaaacagttgaactacacaaacgttcttatatatgacactcaatggcgtagccaagacctcaggtcaggag 26746629  T
Q  116 gtgcaattt 124  Q
    |||||||||    
T  26746630 gtgcaattt 26746638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 312 - 457
Target Start/End: Complemental strand, 32993454 - 32993309
Alignment:
Q  312 attccaaaaattcaaagaaaaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcga 411  Q
    ||||||| |||||||||| || || || || |||||||| ||||||||| ||||||||||||| ||  |||||||||||| |||||| || || || |||    
T  32993454 attccaagaattcaaagataagctaaaattggctagccaatcagcacatctgttgccttcacgacaagtgtgaataacttgagtatgccattctcgccga 32993355  T
Q  412 agaagctcttgaatacgtcttatcaaggaaggaatggctccattga 457  Q
    || | ||||||||||||    | ||| |||||||||| ||||||||    
T  32993354 aggatctcttgaatacgctgaaccaaagaaggaatggttccattga 32993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 42794793 - 42794709
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    |||||||||| | |||| |||  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || |||||||    
T  42794793 attcctaggcgtgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattc 42794709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 46428863 - 46428779
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    |||||||||||| |||| | |  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || |||||||    
T  46428863 attcctaggcatgcaagcctcggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattc 46428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 216 - 454
Target Start/End: Original strand, 3237810 - 3238040
Alignment:
Q  216 agaagctagatatatattcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    |||||||| || |||||| ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||    
T  3237810 agaagctatatgtatatttctaggaatacaagccccagaaatatcataaaaaaggagtcttcgaagctcactaggaggagtctccaaaccaagcaaaatc 3237909  T
Q  316 caaaaattcaaagaaaaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaa 415  Q
    |||         |||||||  |||||||||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||||||||||||||||||||    
T  3237910 caag--------gaaaaacagaagtttgctagccagtcagcacatctgttgccttcacatcacgtgtgaataacttgagtatgtcaatcccgtcgaagaa 3238001  T
Q  416 gctcttgaatacgtcttatcaaggaaggaatggctccat 454  Q
     |||||||||| |||||||||||||||||||| ||||||    
T  3238002 actcttgaatatgtcttatcaaggaaggaatgactccat 3238040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 229 - 391
Target Start/End: Original strand, 45752617 - 45752779
Alignment:
Q  229 atattcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaag 328  Q
    ||||| |||||||| ||  | ||||||||||||| ||| | ||| ||| |||||||| |||||| || ||||||| | | || ||||||| |||||||||    
T  45752617 atatttctaggcatgcacattccaaaaatatcatcaaacatgaggctttgaagctcattaggaggagactccaaagctaccagattccaagaattcaaag 45752716  T
Q  329 aaaaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataactt 391  Q
    | || || || || |||||||| ||||||||| ||||||||||||| || |||||||||||||    
T  45752717 ataagctaaaattggctagccaatcagcacatatgttgccttcacgtcaaatgtgaataactt 45752779  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 446
Target Start/End: Original strand, 26878301 - 26878386
Alignment:
Q  363 gttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttg--aatacgtcttatcaaggaaggaat 446  Q
    |||||||||||| ||  |||||||||||| | ||| |||||| ||| |||||||||||||  ||||| ||||| |||| |||||||    
T  26878301 gttgccttcacgtcaagtgtgaataacttgaatatatcaatctcgttgaagaagctcttgaaaatacatcttaccaagaaaggaat 26878386  T

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Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 264 - 455
Target Start/End: Complemental strand, 26208796 - 26208605
Alignment:
Q  264 aaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaactcaagtttgctagccagtcagcacatttg 363  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||| | |||||||||||||||||||||||| ||    
T  26208796 aaaaaggagtcttcaaagctcactaggaggagtctccaaaacaagcaaattccaagaatccaaagataaattgaagtttgctagccagtcagcacatctg 26208697  T
Q  364 ttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgtcttatcaaggaaggaatggctccatt 455  Q
    ||| ||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||    
T  26208696 ttgtcttcacgccacgtgtgaataatttgagtatgccaatcccgtcgaagaagctcttgaatacttcttgtcaaggaaagaatgactccatt 26208605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 1222872 - 1222956
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    |||||||||||| |||| |||  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || |||||||    
T  1222872 attcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattc 1222956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 213 - 421
Target Start/End: Original strand, 27889593 - 27889802
Alignment:
Q  213 ctaagaagctagatatatattcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctcc-aaaacaagcaa 311  Q
    ||||||||||| |  ||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||| |||||  || |||| ||||||| |||    
T  27889593 ctaagaagctaaacgtatattcctgggcatacaagtttaaaaaatatcattaaaaaggaatcttcgaagctcattaggaagagactccaaaaacaaacaa 27889692  T
Q  312 attccaaaaattcaaagaaaaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcga 411  Q
    ||||||| ||| ||||||||| || | |||||||||||| | ||||||| ||||||||||||  ||   ||||||||||| ||||||||| || || |||    
T  27889693 attccaagaatccaaagaaaatctgacgtttgctagccaattagcacatatgttgccttcacctcatgcgtgaataacttgagtatgtcattctcgccga 27889792  T
Q  412 agaagctctt 421  Q
    | ||||||||    
T  27889793 aaaagctctt 27889802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 236 - 404
Target Start/End: Original strand, 42160966 - 42161134
Alignment:
Q  236 taggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaact 335  Q
    ||||||| |||| || | ||||||||| | ||| || |||| |||| |||||||| |||||||||||||| |  ||||||||| ||| |||  | |  ||    
T  42160966 taggcatgcaagccctagaaatatcatcataaatgattctttgaagttcactaggtgaagtctccaaaactactaaattccaagaatccaagaatatgct 42161065  T
Q  336 caagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatc 404  Q
     || ||||| ||||||||| ||||| |||||||||| |||||  |||||||||||| |||||| |||||    
T  42161066 aaaatttgccagccagtcaacacatatgttgccttcccgccaagtgtgaataacttgagtatgccaatc 42161134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 429
Target Start/End: Complemental strand, 981474 - 981385
Alignment:
Q  340 tttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgt 429  Q
    ||||||||||| ||| ||||| |||||||||||| |||  |||||||||||| ||||||||| ||  | ||||| | |||||||||||||    
T  981474 tttgctagccaatcatcacatatgttgccttcacaccaagtgtgaataacttgagtatgtcattcttgccgaaggatctcttgaatacgt 981385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 26381156 - 26381242
Alignment:
Q  229 atattcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    ||||||||| ||||||||| |||  ||| ||||| ||| |||||  || |||| |||||||||| |||||||||||||| |||||||    
T  26381156 atattcctaagcatacaagcccctgaaacatcatcaaataggagcttttgaagttcactaggaggagtctccaaaacaaacaaattc 26381242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 377
Target Start/End: Complemental strand, 17290332 - 17290190
Alignment:
Q  235 ctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaac 334  Q
    |||||||| |||| |||  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || ||||||| ||  ||||| ||||| ||    
T  17290332 ctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatac 17290233  T
Q  335 tcaagtttgctagccagtcagcacatttgttgccttcacgcca 377  Q
    | || || || ||||| || |||| | | || |||||||||||    
T  17290232 taaaattagcaagccaatcggcacttctatttccttcacgcca 17290190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 250 - 398
Target Start/End: Original strand, 40536277 - 40536425
Alignment:
Q  250 ccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaactcaagtttgctagcc 349  Q
    ||||||||||||| ||| | ||| ||| |||||||| |||||| || ||||||| | | || ||||||| |||||||||| || || || || |||||||    
T  40536277 ccaaaaatatcatcaaacatgaggctttgaagctcattaggaggagactccaaagctaccagattccaagaattcaaagataagctaaaattggctagcc 40536376  T
Q  350 agtcagcacatttgttgccttcacgccacatgtgaataacttcagtatg 398  Q
    | ||||||||| ||| ||||||||||||  |||||||||||| ||||||    
T  40536377 aatcagcacatctgtcgccttcacgccaagtgtgaataacttgagtatg 40536425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 9031488 - 9031572
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    ||||||| ||||||||| ||||||||  |||| ||| ||||||||| ||||||||||||||  ||||||||||| ||||||||||    
T  9031488 attcctaagcatacaagccccaaaaacgtcatcaaacaggagtctttgaagctcactaggaagagtctccaaaaaaagcaaattc 9031572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 231 - 404
Target Start/End: Original strand, 20669984 - 20670157
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaa 330  Q
    |||||||||||| |||| |||| ||||||||| | ||| |||||||   || |||||||| | || ||||||||| | |||||||||| ||| ||| ||     
T  20669984 attcctaggcatgcaagccccagaaatatcatcataaatgagtctttatagttcactaggtggagactccaaaactaccaaattccaagaatccaaggat 20670083  T
Q  331 aaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatc 404  Q
    |  || || ||||| ||||||||| ||||||||||| |||  |||||  |||||||||| | |||||| |||||    
T  20670084 aggctaaaatttgccagccagtcaacacatttgttgtctttccgccaagtgtgaataacctgagtatgccaatc 20670157  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 15828359 - 15828506
Alignment:
Q  278 gaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaactcaagtttgctagccagtcagcacatttgttgccttcacgcca 377  Q
    |||||||| |||||| || ||||||||| |  | ||||||| |||||||||| || || || ||||||||||| ||| |||||||||||| ||||||||     
T  15828359 gaagctcattaggaggagactccaaaactactagattccaagaattcaaagataagctaaaatttgctagccaatcaacacatttgttgctttcacgcct 15828458  T
Q  378 catgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaat 425  Q
      |||||||||||| |||||| || || |||||||| | |||||||||    
T  15828459 agtgtgaataacttgagtatgccattctcgtcgaaggatctcttgaat 15828506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 4228480 - 4228378
Alignment:
Q  229 atattcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaag 328  Q
    |||||| ||||||| |||| |||  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || ||||||| || |||||| ||    
T  4228480 atattcttaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaataattcacag 4228381  T
Q  329 aaa 331  Q
    |||    
T  4228380 aaa 4228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 252 - 429
Target Start/End: Original strand, 12673182 - 12673359
Alignment:
Q  252 aaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaactcaagtttgctagccag 351  Q
    ||||| ||||| ||| | ||| ||| |||||||| |||||| |  ||||||||| | || ||||||| |||||||||| || || || || ||||||||     
T  12673182 aaaaagatcatcaaacatgaggctttgaagctcattaggaggatactccaaaactatcagattccaagaattcaaagataagctaaaattggctagccaa 12673281  T
Q  352 tcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgt 429  Q
    ||||||||| | ||||||||||||||  | |||||||||| ||||||  | || || ||||| | |||||||||||||    
T  12673282 tcagcacatatattgccttcacgccaagtttgaataacttgagtatgcaattctcgccgaaggatctcttgaatacgt 12673359  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 250 - 430
Target Start/End: Complemental strand, 41949840 - 41949658
Alignment:
Q  250 ccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattccaaaaattcaaagaaaaactcaagtttgctagcc 349  Q
    ||||||||||||| | ||| ||||||| |||| |||| ||| | || ||||||||||| |||||||||| ||||||| || | | | ||  |||| || |    
T  41949840 ccaaaaatatcatcacaaatgagtctttgaagttcaccaggtggagactccaaaacaaccaaattccaagaattcaaggatagattaaaaattgcaagtc 41949741  T
Q  350 agtcag--cacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgtc 430  Q
    ||||||  ||||| |||| || || ||||| |||||||||||||||||||| ||||| ||  |||| | ||| ||||||||||    
T  41949740 agtcagcacacatctgttaccatcccgccaaatgtgaataacttcagtatgccaatctcgctgaaggatctcctgaatacgtc 41949658  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 43326460 - 43326548
Alignment:
Q  340 tttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacg 428  Q
    ||||||||||| | |||||||||||||||||||||||  ||||||||||||| | |||| ||||| ||  |||| | ||||||||||||    
T  43326460 tttgctagccaatgagcacatttgttgccttcacgcctaatgtgaataacttgattatgccaatctcgctgaaggatctcttgaatacg 43326548  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 22065093 - 22065177
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    |||||||||||| |||| |||  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || |||||||    
T  22065093 attcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattc 22065177  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 18934360 - 18934276
Alignment:
Q  231 attcctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    |||||||||||| |||| |||  ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || |||||||    
T  18934360 attcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattc 18934276  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 4560212 - 4560292
Alignment:
Q  235 ctaggcatacaagtcccaaaaatatcattaaaaaggagtcttcgaagctcactaggagaagtctccaaaacaagcaaattc 315  Q
    ||||||||  ||| |||| ||||||||| ||| | |||  ||||||||||| |||||| ||||||||||| || |||||||    
T  4560212 ctaggcatgtaagccccagaaatatcatcaaacatgagctttcgaagctcagtaggaggagtctccaaaataatcaaattc 4560292  T

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