View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_41 (Length: 241)
Name: NF11391_low_41
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 25883093 - 25883304
Alignment:
| Q |
14 |
agaatgacatcggtgcatgaaggatacattgaagcattccaatgaagaagctttgagatgtctttaaacccaaatatgtaaacaagaaacctcttaccat |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883093 |
agaatgacattggtgcatgaaggatacattgaagcattccaatgaagaagctttgagatgtctttaaacccaaatatgtaaacaagaaacctcttaccat |
25883192 |
T |
|
| Q |
114 |
aacaactatgcatgcaacaacagctattacagcatagacagtaatgaaagtagaagaaagaatgctagaatcatctgcagttgcaaatgctagccaataa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883193 |
aacaactatgcatgcaacaacagctattacagcatagacagtaatgaaagtagaagaaagaatgctagaatcatctgcagttgcaaatgctagccaataa |
25883292 |
T |
|
| Q |
214 |
tcaccagccaaa |
225 |
Q |
| |
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|||||||||||| |
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| T |
25883293 |
tcaccagccaaa |
25883304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 14317676 - 14317887
Alignment:
| Q |
14 |
agaatgacatcggtgcatgaaggatacattgaagcattccaatgaagaagctttgagatgtctttaaacccaaatatgtaaacaagaaacctcttaccat |
113 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| | |||| ||||| |
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| T |
14317676 |
agaatgacattggtgcgtgaaggatactttgaagcaatccaatgaagaagctttgagatgtctttaaaccccaataagtaaacaagagagctctcaccat |
14317775 |
T |
|
| Q |
114 |
aacaactatgcatgcaacaacagctattacagcatagacagtaatgaaagtagaagaaagaatgctagaatcatctgcagttgcaaatgctagccaataa |
213 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||| ||||||||||||| |
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| T |
14317776 |
aacaactatgcatgcaacaacagctataacagcatagacagtaatgaaagtgaaagaaggaatgccagaatcatctgcagtagcaattgctagccaataa |
14317875 |
T |
|
| Q |
214 |
tcaccagccaaa |
225 |
Q |
| |
|
|||||||||||| |
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|
| T |
14317876 |
tcaccagccaaa |
14317887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 14279502 - 14279713
Alignment:
| Q |
14 |
agaatgacatcggtgcatgaaggatacattgaagcattccaatgaagaagctttgagatgtctttaaacccaaatatgtaaacaagaaacctcttaccat |
113 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| | |||| | ||| |
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| T |
14279502 |
agaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgagatgtctttaaaccccaataagtaaacaagagagctctcaacat |
14279601 |
T |
|
| Q |
114 |
aacaactatgcatgcaacaacagctattacagcatagacagtaatgaaagtagaagaaagaatgctagaatcatctgcagttgcaaatgctagccaataa |
213 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
14279602 |
aacaactatgcatacaacaacagctataacagcatagacagtaatgaaagtggaagaaggaattccagaatcatctgcagttgcagttgctagccaataa |
14279701 |
T |
|
| Q |
214 |
tcaccagccaaa |
225 |
Q |
| |
|
|| ||| ||||| |
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|
| T |
14279702 |
tcgccaaccaaa |
14279713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 14301256 - 14301459
Alignment:
| Q |
14 |
agaatgacatcggtgcatgaaggatacattgaagcattccaatgaagaagctttgagatgtctttaaacccaaatatgtaaacaagaaacctcttaccat |
113 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||| |
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|
| T |
14301256 |
agaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgagatgtctttaaaccccaatatgtaaaaaagaaagctcttgccat |
14301355 |
T |
|
| Q |
114 |
aacaactatgcatgcaacaacagctattacagcatagacagtaatgaaagtagaagaaagaatgctagaatcatctgcagttgcaaatgctagccaataa |
213 |
Q |
| |
|
||| ||||| |||| ||||||||||| ||||||||||||||||||||||| ||||| || | ||||||||||||||| |||| ||||||||||||| |
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|
| T |
14301356 |
aaccactatacatgacacaacagctataacagcatagacagtaatgaaagtgaaagaagaaacggcagaatcatctgcagtagcaattgctagccaataa |
14301455 |
T |
|
| Q |
214 |
tcac |
217 |
Q |
| |
|
|||| |
|
|
| T |
14301456 |
tcac |
14301459 |
T |
|
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