View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_low_44 (Length: 227)
Name: NF11391_low_44
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30719908 - 30720137
Alignment:
| Q |
1 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30719908 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcaga |
30720007 |
T |
|
| Q |
101 |
aaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcat |
181 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30720008 |
aaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattcaatatttgatca----catagtttgtaattgaatgcat |
30720103 |
T |
|
| Q |
182 |
tacatgttagatagacacttaccacattgacctt |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
30720104 |
tacataatagatagacacttaccacattgacctt |
30720137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30892534 - 30892305
Alignment:
| Q |
1 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30892534 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcaga |
30892435 |
T |
|
| Q |
101 |
aaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcat |
181 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30892434 |
aaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattcaatatttgatca----catagtttgtaattgaatgcat |
30892339 |
T |
|
| Q |
182 |
tacatgttagatagacacttaccacattgacctt |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
30892338 |
tacataatagatagacacttaccacattgacctt |
30892305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30881451 - 30881222
Alignment:
| Q |
1 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30881451 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcaga |
30881352 |
T |
|
| Q |
101 |
aaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcat |
181 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30881351 |
aaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagaatttaatgacaattcaatatttgatca----catagtttgtaattgaatgcat |
30881256 |
T |
|
| Q |
182 |
tacatgttagatagacacttaccacattgacctt |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
30881255 |
tacataatagatagacacttaccacattgacctt |
30881222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 44731346 - 44731464
Alignment:
| Q |
3 |
acaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
44731346 |
acaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaa |
44731445 |
T |
|
| Q |
103 |
atgcccaacaacatcctac |
121 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44731446 |
atgcccaacaacatcctac |
44731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 16867733 - 16867854
Alignment:
| Q |
3 |
acaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaa |
102 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16867733 |
acacctttcgtgtcacagtcaacgagttcttgttctgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaa |
16867832 |
T |
|
| Q |
103 |
atgcccaacaacatcctacaaa |
124 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
16867833 |
acgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 8899066 - 8898943
Alignment:
| Q |
1 |
ctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8899066 |
ctacaccttttgtgtcacaatcaacaagttcttgttctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcaga |
8898967 |
T |
|
| Q |
101 |
aaatgcccaacaacatcctacaaa |
124 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
8898966 |
aaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 31727221 - 31727101
Alignment:
| Q |
4 |
caccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaa |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
31727221 |
caccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgatgcaaccgcagaaaa |
31727122 |
T |
|
| Q |
104 |
tgcccaacaacatcctacaaa |
124 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31727121 |
cgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University