View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_5 (Length: 633)
Name: NF11391_low_5
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Original strand, 41446987 - 41447607
Alignment:
| Q |
8 |
cagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaa |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41446987 |
cagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattctattccttcaa |
41447086 |
T |
|
| Q |
108 |
gttcaatggaaaaaatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaacaaaaatata |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41447087 |
gttcaatggaaaaaatccttgaacaagaacatactgttttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaagaaaaatata |
41447186 |
T |
|
| Q |
208 |
atatcataaaattacttgttgtcgctgcatcccttgaggtgtagataaatnnnnnnncagaaaaatcaacatgtttgtaatagatatatatcttattttg |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447187 |
atatcataaaatcacttgttgtcgctgcatcccttgaggtgtagataaataaaaaa-cagaaaaatcaacatgtttgtaatagatatatatcttattttg |
41447285 |
T |
|
| Q |
308 |
attaaaatcaac-------agaaaaatt----tcttgtgttttttacattagggtgtcgacatgtccaggttgtgtcagagcttcatagtggtttataat |
396 |
Q |
| |
|
||||| || | || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447286 |
attaatatatatgtagtgtagcaatgtcgttgtcttgtgttttttacattagggtgtcgacatgtccaggttgtgtcagagcttcatagtggtttataat |
41447385 |
T |
|
| Q |
397 |
gatttgttaagttgagtaattcctctaatagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttgatcattcctca |
496 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447386 |
gatttgttaagttgagtaattccactaatagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttgatcattcctca |
41447485 |
T |
|
| Q |
497 |
tttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgtttaactccttt |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
41447486 |
tttaccttctgtgtttttaaaaagactgcatcgagaatatacttttggtaaaattgatttttgtttggtttccttcctcttcgagttgtttaactccttt |
41447585 |
T |
|
| Q |
597 |
gatttgttaatggcattctttt |
618 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41447586 |
gatttgttaatggcattctttt |
41447607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 618
Target Start/End: Original strand, 41457169 - 41457793
Alignment:
| Q |
8 |
cagagagcatgcaacatagcatcctgggacaatgt-----catggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattcc |
102 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
41457169 |
cagagagcacgcaacatagcatcttgggacaatgtaatgtcatggagaaatctgcagttttgcatattgatccttcccttgtatcatctaattctattcc |
41457268 |
T |
|
| Q |
103 |
ttcaagttcaatggaaaaaatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaacaaaa |
202 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
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|
| T |
41457269 |
ttcaagttcaatgggaaacatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccggttaatcaaagaaatcacagttgttgaagaaaa |
41457368 |
T |
|
| Q |
203 |
atataatatcataaa----attacttgttgtcgctgcatcccttgaggtgtagataaatnnnnnnncagaaaaatcaacatgtttgtaatagatatatat |
298 |
Q |
| |
|
||||||||| ||||| || | ||||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
41457369 |
atataatataataaataaaatcatctgttggtgctgcatcctttgaggtgtaactaaa-----aagcagaaaaatcaacatgtgtgtaatagatatat-- |
41457461 |
T |
|
| Q |
299 |
cttattttgattaaaatcaa-----cagaaaaatt-tcttgtgttttttacattaggg-tgtcgacatgtccaggttgtgtcagag------cttcatag |
385 |
Q |
| |
|
|||||||||||||| | | | | || ||||||| |||||||||||||| ||||||| |||| | ||||||||||| |||||||| |
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|
| T |
41457462 |
cttattttgattaatttatatgtggcggtgtcgttgtcttgtgctttttacattaggggtgtcgacgtgtcgtg-ttgtgtcagagttcgtgcttcatag |
41457560 |
T |
|
| Q |
386 |
tggtttataatgatttgttaagttgagtaattcctctaatagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttg |
485 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41457561 |
ttgtttatcatgacttgttaagttgagtaattcatgtaagagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttg |
41457660 |
T |
|
| Q |
486 |
atcattcctcatttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgt |
585 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
41457661 |
atcattcctcctttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttccttcctcttcgagttgt |
41457760 |
T |
|
| Q |
586 |
ttaactcctttgatttgttaatggcattctttt |
618 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
41457761 |
ttaactcctttgatttgttaatgacattctttt |
41457793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 377 - 608
Target Start/End: Complemental strand, 16419100 - 16418872
Alignment:
| Q |
377 |
gcttcatagtggtttataatgatttgttaagttgagtaattcctctaatagttattcctagagtcaaagtatcaccactcatttccttttattttctcca |
476 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16419100 |
gcttgatagttgtttataatgacttgttaagttgagtaattcatgtaagagttattcctagagtcaaagtatcaccactcatttccttttattttctcca |
16419001 |
T |
|
| Q |
477 |
agttgtttgatcattcctcatttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttcctttttct |
576 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
16419000 |
agtt---tgatcattccacctttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttccttcctct |
16418904 |
T |
|
| Q |
577 |
ttgagttgtttaactcctttgatttgttaatg |
608 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
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|
| T |
16418903 |
tcgagttgtttaactcctttgatttgttaatg |
16418872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 37456220 - 37456113
Alignment:
| Q |
8 |
cagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaa |
107 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||| |||||| ||| | ||||| ||||||||| ||||||||| |||| |||| |||| |
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| T |
37456220 |
cagagagcactcgacatagggtcctgggacaatgtcatggataaatcttcaggaacgcataccgatccttcccctgtatcatcctattcttttccatcaa |
37456121 |
T |
|
| Q |
108 |
gttcaatg |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
37456120 |
gttcaatg |
37456113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 18979651 - 18979609
Alignment:
| Q |
169 |
gattaatcaaggaaatcacagttgttgaacaaaaatataatat |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
18979651 |
gattaatcaaggaaatcacacttgttgatgaaaaatataatat |
18979609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 16238587 - 16238627
Alignment:
| Q |
19 |
caacatagcatcctgggacaatgtcatggagaaatctgcag |
59 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||| |
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|
| T |
16238587 |
caacatagccttctgggacaatgtcatggagaaatatgcag |
16238627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 18988114 - 18988074
Alignment:
| Q |
169 |
gattaatcaaggaaatcacagttgttgaacaaaaatataat |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
18988114 |
gattaatcaaggaaatcacacttgttgatgaaaaatataat |
18988074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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