View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_low_6 (Length: 564)
Name: NF11391_low_6
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 37225792 - 37225351
Alignment:
| Q |
19 |
caacggaccaaaaccatccatgatataggcaaggcttgtgaggagtggggtttcttcatactaaccaatcactctgtatcaaagagtctcatggagaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37225792 |
caacggaccaaaaccatccatgatataggcaaggcttgtgaggagtggggattcttcatactaaccaatcactctgtatcaaagagtctcatggagaaaa |
37225693 |
T |
|
| Q |
119 |
tggttgaccaagtttttgctttctttaatcttaaagaagaagataaacaagtgtatgcagataaggaagtaaaggatgattcaataaagtatggtacaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37225692 |
tggttgaccaagtttttgctttctttaaccttaaagaagaagataagcaagtgtatgcagataaggaagtaacggatgattcaataaagtatggtacaag |
37225593 |
T |
|
| Q |
219 |
cttcaatgtttcaggggataaaaacttgttctggagggatttcattaaaattattgttcatcctgaatttcactcaccggataaaccttctggcttcagg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37225592 |
cttcaatgtttcaggggataaaaacttgttctggagggatttcattaaaattattgttcatcctaaatttcactcaccggataaaccttctggcttcagg |
37225493 |
T |
|
| Q |
319 |
tttttgcttattctctcttttgctttttccttgcaactctaaatccaccatatgctcagtctaaatcaccacatgttgtagattcttaggttgctttgct |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37225492 |
tttttgcttattctctcttttactttttccttgcaactctaaatccaccatatgctcagtctaaatcaccacatgttgtagattcttaggttgctttgct |
37225393 |
T |
|
| Q |
419 |
cataagttttaagttctaaattgtttgtggttatagacttat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37225392 |
cataagttttaagttctaaattgtttgtggttatagacttat |
37225351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 37224817 - 37224728
Alignment:
| Q |
458 |
tatgttaacttaagtactactccatccgtctcattataagtatctgatttgagttgtgcacggttctttaagaatatgattagttgtgtt |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37224817 |
tatgttaacttaagtactactccatccgtctcattataagtatctgatttgagttgtgcacggttctttaagaatatgattagttgtgtt |
37224728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University