View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11391_low_8 (Length: 507)
Name: NF11391_low_8
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 27201018 - 27201499
Alignment:
| Q |
17 |
actatcaataataattgacaaaagaggaaaatttggttgaaacccaatagtgcatgtagtgtttggagaagtgtgtttttctactgctttgaccaaagtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27201018 |
actatcaataataattgacaaaagaggaaaatttggttgaaacccaatagtgcatgtagtgtttggagaagtgtgtttttctactgctttgaccaaagtt |
27201117 |
T |
|
| Q |
117 |
gataatatccactatccaaattagacaattaccacactataaaataagctcgaggacccaattcttactcacaaaatcacaagtgcaacacttgatttaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27201118 |
gataatatccactatccaaattagactattaccacactataaaataagctcgaggacccaattcttactcacaaaatcacaagtgcaacacttgatttaa |
27201217 |
T |
|
| Q |
217 |
tttctcaatagtggtgattcttgttttgtgtataatgcctnnnnnnntggctttgaacttacatcataacctatttttcttctttattatgttggtttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27201218 |
tttctcaatagtggtgattcttgttttgtgtataatgcctaaaaaaatggctttgaacttacatcataacctatttttcttctttattatgttggtttct |
27201317 |
T |
|
| Q |
317 |
atcttgttcatggcttctgctcaattatcttcagatttctatggaacaacatgccctaaagccctttctatcataaactctgcagtgtgtagtgctgttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
27201318 |
atcttgttcatggcttctgctcaattatcttcagatttttatggaacaacatgccctaaagccctttctatcataaactctgcggtgtgcagtgctgttt |
27201417 |
T |
|
| Q |
417 |
cgaaagaacatcgcatgggtgcttcattgcttcgtcttcatttccatgattgctttgtcaatgcacgttctttcttctctct |
498 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27201418 |
ctaaagaacatcgcatgggtgcttcattgcttcgtcttcatttccatgattgctttgtcaatgcacgttctttcttctctct |
27201499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 52301198 - 52301246
Alignment:
| Q |
431 |
atgggtgcttcattgcttcgtcttcatttccatgattgctttgtcaatg |
479 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
52301198 |
atgggtgcttctttgcttcgtcttcactttcatgattgctttgtcaatg |
52301246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 10084420 - 10084355
Alignment:
| Q |
409 |
tgctgtttcgaaagaacatcgcatgggtgcttcattgcttcgtcttcatttccatgattgctttgt |
474 |
Q |
| |
|
|||||| |||| ||| | |||| | ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
10084420 |
tgctgtgtcgagagatcgtcgcttaggtgcatccttgctccgtcttcatttccatgattgctttgt |
10084355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 17549506 - 17549458
Alignment:
| Q |
431 |
atgggtgcttcattgcttcgtcttcatttccatgattgctttgtcaatg |
479 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
17549506 |
atggctgcttctttgcttcgtcttcactttcatgattgctttgtaaatg |
17549458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 23229807 - 23229839
Alignment:
| Q |
447 |
ttcgtcttcatttccatgattgctttgtcaatg |
479 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
23229807 |
ttcgtcttcattttcatgattgctttgtcaatg |
23229839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University