View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11391_low_9 (Length: 507)
Name: NF11391_low_9
Description: NF11391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11391_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 38619214 - 38618728
Alignment:
| Q |
11 |
agataagaatgggaaataagacattaatcaactgttgcaagtaattaatggaacgtaagtgttgcttnnnnnnncaaagtttagctagttaatttgacat |
110 |
Q |
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| T |
38619214 |
agataagaatgggaaataagacattaatcaactgttgcaagtaattaatggaacgtaagtgttgcttaaaaaaacaaagtttagctagttaatttgacat |
38619115 |
T |
|
| Q |
111 |
ttcagccattattataaatttattagtgc---------aattaaaatttattgataaaacgtcgttttcttactttcctcccccc-accttcaatacacg |
200 |
Q |
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| T |
38619114 |
ttcagccattattataaatttattagtgcttttagtgcaattaaaatttattgataaaacgtcgttttcttactttcctcccccccaccttcaatacacg |
38619015 |
T |
|
| Q |
201 |
gtacatagatttacgtacgtaggtccacgaatgtaccgcatgaatgacagacatacacaagtcgagagtgccatcttttgtgcagccttcaattacatga |
300 |
Q |
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| T |
38619014 |
gtacatagatttacgtacgtaggtccacgaatgtaccgcatgaatgacagacagacacaagtcgagagtgccatcttttgtgcagccttcaattacatga |
38618915 |
T |
|
| Q |
301 |
attttttatgctatttcttgtactaatgttgttgcctgttgggatacaaaaatgcatacgaacggaattgaaccagtcacactcacacgaattgctgacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38618914 |
attttttatgctatttcttgtactaatgttgttgcctgttgggatacaaaaatgcatacgaacggaattgaaccagtcacactcacacgaattgctaacc |
38618815 |
T |
|
| Q |
401 |
atacatgggtggtttgaagatgaaatgtgtaaatggcttatagctagtcatggctgcgccattggtctttgtactagtatcatatcc |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38618814 |
atacatgggtggtttgaagatgaaatgtgtaaatggcttatagctagtcatggctgcgccattggtctttgtactagtatcttatcc |
38618728 |
T |
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