View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11392_high_2 (Length: 332)
Name: NF11392_high_2
Description: NF11392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11392_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 16490618 - 16490294
Alignment:
| Q |
1 |
tagagatcaacaacaaatgatgaaacaaaattagaaacagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaagtattgacaat |
100 |
Q |
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| T |
16490618 |
tagagatcaacaacaaatgatgaaacaaaattagaagcagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaagtattgacaat |
16490519 |
T |
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| Q |
101 |
taagagcaatagagccatggttggtcatgttacat-------------ataatgaaatttgcttgcatgtaatgtcttttcagagaatagttagtataag |
187 |
Q |
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| T |
16490518 |
taacagcaatagagccatggttggtcatgttacatcaggcatcgtttgataatgaaatttgcttgcatgtaatgtcttttgagagaatagttagtataag |
16490419 |
T |
|
| Q |
188 |
ttttaggatgatagtcaatttatatttatatat--gccaagatcccatgaacactggaaaaaacatacatgtttcagagttctatttcaccaataatttt |
285 |
Q |
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| T |
16490418 |
ttttaggatgatagtcaatttatatttatatatatgccaacatcccatgaacactggaaaaaacatacatgtttcagagttctatttcaccaataatttt |
16490319 |
T |
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| Q |
286 |
ccatacacggataagacggatctta |
310 |
Q |
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| T |
16490318 |
ccatacacagataagacggatctta |
16490294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 7034359 - 7034443
Alignment:
| Q |
6 |
atcaacaac-aaatgatgaaacaaaattagaaacagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaa |
89 |
Q |
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||||||||| ||||||||||||| ||||||||||||||| |||||||| || ||||||||||| | | |||| ||||||||||| |
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| T |
7034359 |
atcaacaaccaaatgatgaaacagaattagaaacagcaagaataaacatcacgaagtaattccagataactaaaaactagtacaa |
7034443 |
T |
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