View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11392_low_1 (Length: 472)
Name: NF11392_low_1
Description: NF11392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11392_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 8461477 - 8461948
Alignment:
| Q |
1 |
attaaagattgcattgctttagcttctaaagccataaatctgcttgataaaaagagattcggtggtaacttggccctcaagatagctgtttccaaagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8461477 |
attaaagattgcattgctttagcttctaaagccataaatctgcttgataaaaagagattcggtggtaacttggccctcaagatagctgtttccaaagctt |
8461576 |
T |
|
| Q |
101 |
ttgatactcttaattgggagttttttcttaaagtacagtcttttgcaattgaattgaaaccatcttactcaacaaccatttcaatttcaatcaatggagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8461577 |
ttgatactcttaattgggagttttttcttaaagtacagtcttttgcaattgaattgaaaccatcttactcaacaaccatttcaatttcaatcaatggagc |
8461676 |
T |
|
| Q |
201 |
tcaacatggctatttcaattgcaagagaggggtcaaacaa-------------------cctctcctttttctgtttggcataaaaagttctcagtagag |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8461677 |
tcaacatggctatttcaattgcaagagaggggtcaaacaaggtgactctttatttatcccctctcctttttctgtttggcataaaaagttctcagtagag |
8461776 |
T |
|
| Q |
282 |
gaatgtcaaggcttgtggatgaaggtaaaattgatcttatagaggctttagatatgtgcaggtgccttctcattgtttttatgctaatgactttatggta |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8461777 |
gaatgtcaaggcttgtggatgaaggtaaaattgatcttatagaggctttagatatgtgcaggtgccttctcattgtttttatgctaatgactttatggta |
8461876 |
T |
|
| Q |
382 |
tactacaaaggtaagctatctagcctggaggctcataaagctattttttctagataagatgtttgttctagt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
8461877 |
tactacaaaggtaagctatctagcctggaggctcatgaagctattttttctagatatgatgtttgttctagt |
8461948 |
T |
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