View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11392_low_3 (Length: 308)
Name: NF11392_low_3
Description: NF11392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11392_low_3 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 107 - 308
Target Start/End: Complemental strand, 16079518 - 16079317
Alignment:
| Q |
107 |
cacaaagcttgatccttttgtaacaacctccacctccacttcgccaaaagactcaaattcactaccctcatatctccaactccgaaccctcatttggcac |
206 |
Q |
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| T |
16079518 |
cacaaagcttgatccttttgtaacaacctccacctccacttcgccaaaagactcaaattcactaccctcatatctccaactcccaaccctcctttggcac |
16079419 |
T |
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| Q |
207 |
gaggttggcaaaccatcgaccactttacccaacacaccttctttccccatcactccaccccatagaaattctctttgaattttcaccactctcttccaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16079418 |
gaggttggcaaaccatcgaccactttacccaacacaccttctttccccatcactccaccccatagaaattctctttgaattttcaccactctcttccaca |
16079319 |
T |
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| Q |
307 |
cc |
308 |
Q |
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|| |
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| T |
16079318 |
cc |
16079317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 16080710 - 16080606
Alignment:
| Q |
12 |
cagcacagaacagatacaaagggcccataaaacgtttatccacgtacata----acagcaccaaaaagacagacacagcagaaactaaaaaccagaaaac |
107 |
Q |
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||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16080710 |
cagcacaaaacagatacaaagggcccataaaacggttacccacgtacatatataacagcaccaaaaagacagacacagcagaaactaaaaaccagaaaac |
16080611 |
T |
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| Q |
108 |
acaaa |
112 |
Q |
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||||| |
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| T |
16080610 |
acaaa |
16080606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 308
Target Start/End: Original strand, 21943610 - 21943741
Alignment:
| Q |
170 |
accctcatatctccaactccgaaccctcatttggcacgaggttggcaaaccatcgaccactttacccaacacaccttctttccccatcactccaccccat |
269 |
Q |
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| T |
21943610 |
accctcatatctctaacccccaatccccctttggctcgaggttggcaaaccgtcgaccacttaacccaattcaccttcttcccc-------cccccccaa |
21943702 |
T |
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| Q |
270 |
agaaattctctttgaattttcaccactctcttccacacc |
308 |
Q |
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| T |
21943703 |
agaaattctctttgaattctcaccactttcttccacacc |
21943741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 308
Target Start/End: Original strand, 3762067 - 3762270
Alignment:
| Q |
107 |
cacaaagcttgatccttttgtaacaacctccacctccacttcgccaaaagactcaaattcactaccctcatatctccaactccgaaccctcatttggcac |
206 |
Q |
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| T |
3762067 |
cacaaagcttgatccggttgaatcaacctccacctccatttatctaaaagactaaaattcaccatccttatgtctctaactcccaaacccccctaagatc |
3762166 |
T |
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| Q |
207 |
gaggttggcaaaccatcgaccactttacccaacacaccttctttcccc--atcactccaccccatagaaattctctttgaattttcaccactctcttcca |
304 |
Q |
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||||| |||| ||| ||||||||||||||||||| |||||||| |||| ||||| || ||||| ||||||||||||| |||| ||||||| ||||||| |
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| T |
3762167 |
gaggtaggcataccgtcgaccactttacccaacaaaccttcttaccccccatcacacctccccaaagaaattctctttcaattctcaccaccgtcttcca |
3762266 |
T |
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| Q |
305 |
cacc |
308 |
Q |
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|||| |
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| T |
3762267 |
cacc |
3762270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 12279471 - 12279506
Alignment:
| Q |
133 |
cctccacctccacttcgccaaaagactcaaattcac |
168 |
Q |
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| T |
12279471 |
cctccacctccacttcgccaaaagacttaaattcac |
12279506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 55328065 - 55327979
Alignment:
| Q |
224 |
gaccactttacccaacacaccttctttcccca--tcactccaccccatagaaattctctttgaattttcaccactctcttccacacc |
308 |
Q |
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| T |
55328065 |
gaccacttaacccaacacaccttatttccccccttcactccaccccaaaggaattgacgttgaattctcaccactttcttccacacc |
55327979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 42112228 - 42112272
Alignment:
| Q |
264 |
ccccatagaaattctctttgaattttcaccactctcttccacacc |
308 |
Q |
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| T |
42112228 |
ccccataggaattctctttgaattctcaccaccctcttccacacc |
42112272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 44683398 - 44683321
Alignment:
| Q |
233 |
acccaacacaccttctttcc-ccatc-actccaccccatagaaattctctttgaattttcaccactctcttccacacc |
308 |
Q |
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||||||||||| |||||||| |||| || || |||||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
44683398 |
acccaacacactttctttccaccattgacacctccccataggaattctctttgaattctcaccaccctcttccacacc |
44683321 |
T |
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