View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11393_high_1 (Length: 457)
Name: NF11393_high_1
Description: NF11393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11393_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 230 - 438
Target Start/End: Complemental strand, 7558479 - 7558273
Alignment:
| Q |
230 |
tggtccatgtattgattttcttgcaggtgctgatgaacctatgcaacaatgttgtgatgcagttatcacaattgatgctgaagccaccactgcccttgat |
329 |
Q |
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| T |
7558479 |
tggtccatgtattgattttcttgcaggtgctgatgaacctatgcaacaatgttgtgatgcagttatcacaattgatgctgaagccactactgcccttgat |
7558380 |
T |
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| Q |
330 |
cgtaaggatacttgtaggtgcttgagagaatttgctaggagtattttatttatttgatgagaagaatagtgctgcactctttgccaaatgtggtgctatc |
429 |
Q |
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| T |
7558379 |
cgtaaggatac--gtaggtgcttgagagaatttgctaggagtattttatttatttgatgagaagaatggtgctgcactctttgccaaatgtggtgctgtc |
7558282 |
T |
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| Q |
430 |
actccctac |
438 |
Q |
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| T |
7558281 |
actccctac |
7558273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 7558886 - 7558743
Alignment:
| Q |
88 |
cttaaaatgtaatttgtcaatttaatattgctattaattttcttaagtttctcttaatttagtctacatatgttagggattaaggaccatgcaccacaac |
187 |
Q |
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| T |
7558886 |
cttaaaatgtattttgtcaatttaatattgctattaattttcttaagtttctcttaatttagtctacatatgttagggattggggaccatgcaccacaac |
7558787 |
T |
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| Q |
188 |
taccgccttcattatatcttgacaaagacatcactctcctcctg |
231 |
Q |
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| T |
7558786 |
taccaccttcattatatcttgacaaagacatccctctcctcctg |
7558743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7558944 - 7558880
Alignment:
| Q |
1 |
ttagaataatttatttttaatataagtttatttgacttcttaagaaaataagttaacacttaaaa |
65 |
Q |
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| T |
7558944 |
ttagaataatttatttttaatataagtttatttgacttcttaagaaaataagttaacacttaaaa |
7558880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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