View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11393_low_2 (Length: 426)
Name: NF11393_low_2
Description: NF11393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11393_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 194805 - 195216
Alignment:
| Q |
16 |
cattgtgtacttgaaacaagagcaaattgatgagattgcttatggccttctacaatctggagtttctttcctttgggtaaatgaaaccgccccataaaga |
115 |
Q |
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| T |
194805 |
cattgtgtacttgaaacaagagcaaattgatgagattgcttatggccttctacaatctggagtttctttcctctgggtaa-tgaaaccgccccataaaga |
194903 |
T |
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| Q |
116 |
ttctggcaagcaacctcacatgcttccggatgggattttggagaaaactaagagcagaggcaaagtggttcgttggagtcctcaggagcaggttcttgca |
215 |
Q |
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| T |
194904 |
ttctggcaagcaacctcacatgcttccggatgggattttggagaaaactaagagcagaggcaaagtggttcgttggagtcctcaggagcaggttcttgca |
195003 |
T |
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| Q |
216 |
caccggtcaatcgcttgctttgttactcactgtggctggaactcgttgatggaggctattgcctctggagtgccggttgtggcgttcccacaatggggtg |
315 |
Q |
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| T |
195004 |
caccggtcaatcgcttgctttgttactcactgtggctggaactcgtcgatggaggctattgcctctggagtgccggttgtggcgttcccacaatggggtg |
195103 |
T |
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| Q |
316 |
accaagtgacgaatgccaa--gtacttggttgatgtgtatggagttgggattggaatgtgcaagggtgaagctgcaaacgaattgataaacagagatgag |
413 |
Q |
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| T |
195104 |
accaagtgacgaatgccaagtgtacttggttgatgtgtatggagttgggattggaatgtgcaagggtgaagctgcaaacgaattgataaacagagatgag |
195203 |
T |
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| Q |
414 |
gtcaacaagtgtt |
426 |
Q |
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| T |
195204 |
gttaacaagtgtt |
195216 |
T |
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